Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2023

Experiment: 2 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2022 and DvMF_2023 are separated by 135 nucleotidesDvMF_2023 and DvMF_2024 are separated by 283 nucleotides DvMF_2022: DvMF_2022 - transcriptional regulator, GntR family with aminotransferase domain (RefSeq), at 2,504,195 to 2,505,976 _2022 DvMF_2023: DvMF_2023 - pyridoxamine 5'-phosphate oxidase-related FMN-binding protein (RefSeq), at 2,506,112 to 2,506,480 _2023 DvMF_2024: DvMF_2024 - pseudouridine synthase (RefSeq), at 2,506,764 to 2,507,945 _2024 Position (kb) 2506 2507Strain fitness (log2 ratio) -1 0 1at 2505.120 kb on - strand, within DvMF_2022at 2505.181 kb on + strand, within DvMF_2022at 2505.480 kb on - strand, within DvMF_2022at 2505.591 kb on + strand, within DvMF_2022at 2505.594 kb on + strand, within DvMF_2022at 2505.921 kb on + strandat 2506.068 kb on + strandat 2506.071 kb on - strandat 2506.109 kb on + strandat 2506.195 kb on + strand, within DvMF_2023at 2506.410 kb on + strand, within DvMF_2023at 2506.430 kb on + strand, within DvMF_2023at 2506.490 kb on - strandat 2506.804 kb on - strandat 2506.842 kb on + strandat 2506.863 kb on - strandat 2507.250 kb on + strand, within DvMF_2024at 2507.250 kb on + strand, within DvMF_2024

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 30C
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2,505,120 - DvMF_2022 0.52 +0.3
2,505,181 + DvMF_2022 0.55 +0.1
2,505,480 - DvMF_2022 0.72 +0.7
2,505,591 + DvMF_2022 0.78 +0.0
2,505,594 + DvMF_2022 0.79 +0.1
2,505,921 + +0.5
2,506,068 + -0.3
2,506,071 - -0.5
2,506,109 + -0.2
2,506,195 + DvMF_2023 0.22 +1.4
2,506,410 + DvMF_2023 0.81 +0.9
2,506,430 + DvMF_2023 0.86 +0.5
2,506,490 - +0.8
2,506,804 - +0.1
2,506,842 + +0.2
2,506,863 - +0.6
2,507,250 + DvMF_2024 0.41 +0.1
2,507,250 + DvMF_2024 0.41 -0.2

Or see this region's nucleotide sequence