Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1875

Experiment: 2 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1874 and DvMF_1875 overlap by 4 nucleotidesDvMF_1875 and DvMF_1876 are separated by 704 nucleotides DvMF_1874: DvMF_1874 - hypothetical protein (RefSeq), at 2,302,417 to 2,304,678 _1874 DvMF_1875: DvMF_1875 - multi-sensor hybrid histidine kinase (RefSeq), at 2,304,675 to 2,306,792 _1875 DvMF_1876: DvMF_1876 - no description, at 2,307,497 to 2,307,796 _1876 Position (kb) 2304 2305 2306 2307Strain fitness (log2 ratio) -1 0 1at 2304.744 kb on + strandat 2305.148 kb on - strand, within DvMF_1875at 2305.150 kb on + strand, within DvMF_1875at 2305.163 kb on - strand, within DvMF_1875at 2305.283 kb on + strand, within DvMF_1875at 2305.329 kb on - strand, within DvMF_1875at 2305.444 kb on - strand, within DvMF_1875at 2305.728 kb on - strand, within DvMF_1875at 2305.752 kb on - strand, within DvMF_1875at 2305.778 kb on + strand, within DvMF_1875at 2305.812 kb on - strand, within DvMF_1875at 2305.853 kb on - strand, within DvMF_1875at 2305.880 kb on + strand, within DvMF_1875at 2305.995 kb on - strand, within DvMF_1875at 2306.022 kb on - strand, within DvMF_1875at 2306.325 kb on - strand, within DvMF_1875at 2306.434 kb on + strand, within DvMF_1875at 2306.462 kb on - strand, within DvMF_1875at 2306.600 kb on + strandat 2306.805 kb on - strandat 2307.043 kb on + strandat 2307.245 kb on - strandat 2307.250 kb on - strandat 2307.257 kb on + strandat 2307.260 kb on - strandat 2307.262 kb on + strandat 2307.262 kb on + strandat 2307.262 kb on + strandat 2307.265 kb on - strandat 2307.267 kb on + strandat 2307.536 kb on - strand, within DvMF_1876

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Per-strain Table

Position Strand Gene LocusTag Fraction 2 day starvation, 30C
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2,304,744 + +0.9
2,305,148 - DvMF_1875 0.22 +0.5
2,305,150 + DvMF_1875 0.22 +0.5
2,305,163 - DvMF_1875 0.23 +0.5
2,305,283 + DvMF_1875 0.29 +0.4
2,305,329 - DvMF_1875 0.31 +0.2
2,305,444 - DvMF_1875 0.36 +0.5
2,305,728 - DvMF_1875 0.50 -0.0
2,305,752 - DvMF_1875 0.51 +0.5
2,305,778 + DvMF_1875 0.52 +0.6
2,305,812 - DvMF_1875 0.54 +0.6
2,305,853 - DvMF_1875 0.56 +0.6
2,305,880 + DvMF_1875 0.57 +0.4
2,305,995 - DvMF_1875 0.62 +0.3
2,306,022 - DvMF_1875 0.64 -0.4
2,306,325 - DvMF_1875 0.78 +0.7
2,306,434 + DvMF_1875 0.83 +1.4
2,306,462 - DvMF_1875 0.84 +0.5
2,306,600 + +0.7
2,306,805 - +0.2
2,307,043 + -0.0
2,307,245 - +0.5
2,307,250 - -0.1
2,307,257 + +0.6
2,307,260 - +0.5
2,307,262 + +0.2
2,307,262 + +0.0
2,307,262 + +0.6
2,307,265 - +0.4
2,307,267 + +0.6
2,307,536 - DvMF_1876 0.13 +0.3

Or see this region's nucleotide sequence