Experiment: 2 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1567 and DvMF_1568 are separated by 102 nucleotides DvMF_1568 and DvMF_1569 overlap by 1 nucleotides DvMF_1569 and DvMF_1570 are separated by 10 nucleotides
DvMF_1567: DvMF_1567 - D-lactate dehydrogenase (cytochrome) (RefSeq), at 1,933,443 to 1,934,867
_1567
DvMF_1568: DvMF_1568 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,934,970 to 1,935,644
_1568
DvMF_1569: DvMF_1569 - ABC transporter related (RefSeq), at 1,935,644 to 1,936,429
_1569
DvMF_1570: DvMF_1570 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,936,440 to 1,937,120
_1570
Position (kb)
1934
1935
1936 Strain fitness (log2 ratio)
-1
0
1 at 1934.082 kb on - strand, within DvMF_1567 at 1934.149 kb on + strand, within DvMF_1567 at 1934.439 kb on - strand, within DvMF_1567 at 1934.444 kb on - strand, within DvMF_1567 at 1934.445 kb on - strand, within DvMF_1567 at 1934.711 kb on + strand, within DvMF_1567 at 1934.727 kb on + strand at 1934.756 kb on - strand at 1935.359 kb on - strand, within DvMF_1568 at 1935.371 kb on - strand, within DvMF_1568 at 1935.510 kb on - strand, within DvMF_1568 at 1935.795 kb on + strand, within DvMF_1569 at 1935.799 kb on - strand, within DvMF_1569 at 1935.799 kb on - strand, within DvMF_1569 at 1936.314 kb on - strand, within DvMF_1569 at 1936.319 kb on - strand, within DvMF_1569 at 1936.494 kb on + strand at 1936.509 kb on - strand, within DvMF_1570 at 1936.510 kb on - strand, within DvMF_1570 at 1936.510 kb on - strand, within DvMF_1570 at 1936.554 kb on - strand, within DvMF_1570 at 1936.565 kb on + strand, within DvMF_1570 at 1936.642 kb on + strand, within DvMF_1570
Per-strain Table
Position Strand Gene LocusTag Fraction 2 day starvation, 30C remove 1,934,082 - DvMF_1567 0.45 +0.2 1,934,149 + DvMF_1567 0.50 -0.5 1,934,439 - DvMF_1567 0.70 +0.5 1,934,444 - DvMF_1567 0.70 +0.4 1,934,445 - DvMF_1567 0.70 -0.3 1,934,711 + DvMF_1567 0.89 +0.6 1,934,727 + +0.4 1,934,756 - +0.0 1,935,359 - DvMF_1568 0.58 +0.0 1,935,371 - DvMF_1568 0.59 +0.1 1,935,510 - DvMF_1568 0.80 -0.3 1,935,795 + DvMF_1569 0.19 -0.1 1,935,799 - DvMF_1569 0.20 +0.1 1,935,799 - DvMF_1569 0.20 +0.8 1,936,314 - DvMF_1569 0.85 +0.7 1,936,319 - DvMF_1569 0.86 +0.3 1,936,494 + +0.7 1,936,509 - DvMF_1570 0.10 +0.1 1,936,510 - DvMF_1570 0.10 +0.0 1,936,510 - DvMF_1570 0.10 +0.1 1,936,554 - DvMF_1570 0.17 +0.4 1,936,565 + DvMF_1570 0.18 -1.4 1,936,642 + DvMF_1570 0.30 +0.4
Or see this region's nucleotide sequence