Experiment: 2 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0686 and DvMF_0687 are separated by 11 nucleotides DvMF_0687 and DvMF_0688 are separated by 10 nucleotides DvMF_0688 and DvMF_0689 are separated by 60 nucleotides DvMF_0689 and DvMF_0690 overlap by 1 nucleotides
DvMF_0686: DvMF_0686 - secretion ATPase, PEP-CTERM locus subfamily (RefSeq), at 827,628 to 828,815
_0686
DvMF_0687: DvMF_0687 - exopolysaccharide/PEPCTERM locus tyrosine autokinase (RefSeq), at 828,827 to 829,708
_0687
DvMF_0688: DvMF_0688 - polysaccharide chain length determinant protein, PEP-CTERM locus subfamily (RefSeq), at 829,719 to 831,161
_0688
DvMF_0689: DvMF_0689 - polysaccharide export protein, PEP-CTERM sytem-associated (RefSeq), at 831,222 to 832,028
_0689
DvMF_0690: DvMF_0690 - sugar transferase, PEP-CTERM system associated (RefSeq), at 832,028 to 833,359
_0690
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -1
0
1 at 828.808 kb on + strand at 828.935 kb on + strand, within DvMF_0687 at 829.158 kb on - strand, within DvMF_0687 at 829.343 kb on + strand, within DvMF_0687 at 829.348 kb on + strand, within DvMF_0687 at 829.351 kb on - strand, within DvMF_0687 at 829.538 kb on - strand, within DvMF_0687 at 829.717 kb on + strand at 829.725 kb on - strand at 829.725 kb on - strand at 829.725 kb on - strand at 829.804 kb on - strand at 829.815 kb on - strand at 829.820 kb on + strand at 829.863 kb on - strand at 829.985 kb on - strand, within DvMF_0688 at 830.273 kb on + strand, within DvMF_0688 at 830.488 kb on + strand, within DvMF_0688 at 831.063 kb on - strand at 831.083 kb on + strand at 831.156 kb on - strand at 831.210 kb on + strand at 831.220 kb on + strand at 831.228 kb on - strand at 831.454 kb on - strand, within DvMF_0689 at 831.521 kb on - strand, within DvMF_0689 at 831.544 kb on + strand, within DvMF_0689 at 831.672 kb on - strand, within DvMF_0689 at 831.673 kb on - strand, within DvMF_0689
Per-strain Table
Position Strand Gene LocusTag Fraction 2 day starvation, 30C remove 828,808 + +0.3 828,935 + DvMF_0687 0.12 +0.7 829,158 - DvMF_0687 0.38 +0.2 829,343 + DvMF_0687 0.59 +0.3 829,348 + DvMF_0687 0.59 -0.0 829,351 - DvMF_0687 0.59 +0.5 829,538 - DvMF_0687 0.81 +0.2 829,717 + +0.3 829,725 - +0.3 829,725 - +0.4 829,725 - +0.2 829,804 - +0.9 829,815 - +0.3 829,820 + +0.2 829,863 - +1.0 829,985 - DvMF_0688 0.18 +0.5 830,273 + DvMF_0688 0.38 -0.1 830,488 + DvMF_0688 0.53 -0.2 831,063 - +0.3 831,083 + +0.3 831,156 - +0.2 831,210 + -0.1 831,220 + +0.2 831,228 - +0.7 831,454 - DvMF_0689 0.29 +0.9 831,521 - DvMF_0689 0.37 +0.3 831,544 + DvMF_0689 0.40 -0.3 831,672 - DvMF_0689 0.56 +0.5 831,673 - DvMF_0689 0.56 +0.2
Or see this region's nucleotide sequence