Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU_tRNA-Ser-4

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1527 and tRNA-Ser are separated by 176 nucleotidestRNA-Ser and DVU1528 are separated by 342 nucleotides DVU1527: DVU1527 - site-specific recombinase, phage integrase family (TIGR), at 1,594,709 to 1,595,902 DVU1527 DVU_tRNA-Ser-4: tRNA-Ser - tRNA with anticodon CGA for Ser (VIMSS-AUTO), at 1,596,079 to 1,596,173 tRNA-Ser DVU1528: DVU1528 - cytidine/deoxycytidylate deaminase family protein (TIGR), at 1,596,516 to 1,597,001 DVU1528 Position (kb) 1596 1597Strain fitness (log2 ratio) -2 -1 0 1at 1595.093 kb on - strand, within DVU1527at 1595.130 kb on + strand, within DVU1527at 1595.206 kb on - strand, within DVU1527at 1595.233 kb on - strand, within DVU1527at 1595.272 kb on - strand, within DVU1527at 1595.403 kb on - strand, within DVU1527at 1595.403 kb on - strand, within DVU1527at 1595.531 kb on - strand, within DVU1527at 1595.587 kb on + strand, within DVU1527at 1595.818 kb on + strandat 1595.826 kb on - strandat 1595.883 kb on + strandat 1595.891 kb on - strandat 1595.925 kb on - strandat 1595.958 kb on + strandat 1596.343 kb on + strandat 1596.343 kb on + strandat 1596.358 kb on - strandat 1596.371 kb on - strandat 1596.378 kb on + strandat 1596.403 kb on - strandat 1596.405 kb on + strandat 1596.405 kb on + strandat 1596.499 kb on + strandat 1596.499 kb on + strandat 1596.507 kb on - strandat 1596.507 kb on - strandat 1596.523 kb on + strandat 1597.070 kb on - strandat 1597.151 kb on - strandat 1597.166 kb on + strandat 1597.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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1,595,093 - DVU1527 0.32 +0.1
1,595,130 + DVU1527 0.35 -0.6
1,595,206 - DVU1527 0.42 -0.1
1,595,233 - DVU1527 0.44 -2.3
1,595,272 - DVU1527 0.47 -0.4
1,595,403 - DVU1527 0.58 +0.1
1,595,403 - DVU1527 0.58 -0.3
1,595,531 - DVU1527 0.69 +0.1
1,595,587 + DVU1527 0.74 +1.0
1,595,818 + +0.1
1,595,826 - -0.2
1,595,883 + -1.0
1,595,891 - -0.1
1,595,925 - -0.4
1,595,958 + -0.3
1,596,343 + -0.3
1,596,343 + +0.2
1,596,358 - +0.3
1,596,371 - -0.6
1,596,378 + -1.5
1,596,403 - +1.7
1,596,405 + -1.0
1,596,405 + +0.3
1,596,499 + +0.4
1,596,499 + +0.0
1,596,507 - -0.3
1,596,507 - -0.5
1,596,523 + +0.2
1,597,070 - -0.6
1,597,151 - +0.4
1,597,166 + +0.1
1,597,166 + -0.0

Or see this region's nucleotide sequence