Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1587
Experiment: m.b. Spectinomycin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Spectinomycin 0.0015 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,652,220 | - | Dshi_1586 | 0.50 | +0.5 | |
1,652,227 | + | Dshi_1586 | 0.51 | -0.4 | |
1,652,267 | - | Dshi_1586 | 0.53 | -1.1 | |
1,652,308 | + | Dshi_1586 | 0.56 | +0.8 | |
1,652,345 | - | Dshi_1586 | 0.58 | +0.3 | |
1,652,581 | + | Dshi_1586 | 0.74 | +1.6 | |
1,652,610 | + | Dshi_1586 | 0.76 | +0.0 | |
1,652,639 | + | Dshi_1586 | 0.77 | +0.0 | |
1,652,674 | + | Dshi_1586 | 0.80 | -0.5 | |
1,652,763 | + | Dshi_1586 | 0.85 | -1.2 | |
1,652,787 | - | Dshi_1586 | 0.87 | -0.1 | |
1,652,912 | - | -0.3 | |||
1,652,987 | + | -0.6 | |||
1,652,995 | - | -0.2 | |||
1,653,011 | - | -0.4 | |||
1,654,878 | - | Dshi_1588 | 0.22 | +1.3 | |
1,654,885 | - | Dshi_1588 | 0.23 | -0.3 | |
1,655,005 | - | Dshi_1588 | 0.42 | -0.2 | |
1,655,064 | + | Dshi_1588 | 0.51 | +0.7 | |
1,655,088 | + | Dshi_1588 | 0.55 | +1.0 | |
1,655,100 | + | Dshi_1588 | 0.56 | +0.3 | |
1,655,118 | - | Dshi_1588 | 0.59 | -0.4 | |
1,655,230 | - | Dshi_1588 | 0.77 | +0.2 | |
1,655,340 | + | -0.5 | |||
1,655,484 | - | Dshi_1589 | 0.12 | -0.1 | |
1,655,493 | - | Dshi_1589 | 0.13 | -0.4 | |
1,655,524 | + | Dshi_1589 | 0.17 | -0.4 | |
1,655,532 | - | Dshi_1589 | 0.18 | +0.3 | |
1,655,589 | - | Dshi_1589 | 0.24 | -0.3 | |
1,655,649 | + | Dshi_1589 | 0.31 | +0.6 | |
1,655,657 | - | Dshi_1589 | 0.32 | +0.3 |
Or see this region's nucleotide sequence