Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1562

Experiment: m.b. Spectinomycin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1561 and Dshi_1562 are separated by 404 nucleotidesDshi_1562 and Dshi_1563 are separated by 144 nucleotides Dshi_1561: Dshi_1561 - transcription-repair coupling factor (RefSeq), at 1,622,403 to 1,625,885 _1561 Dshi_1562: Dshi_1562 - hypothetical protein (RefSeq), at 1,626,290 to 1,626,820 _1562 Dshi_1563: Dshi_1563 - Porphobilinogen synthase (RefSeq), at 1,626,965 to 1,627,966 _1563 Position (kb) 1626 1627Strain fitness (log2 ratio) -2 -1 0 1at 1625.370 kb on - strand, within Dshi_1561at 1625.370 kb on - strand, within Dshi_1561at 1625.607 kb on + strandat 1625.838 kb on + strandat 1625.915 kb on + strandat 1625.985 kb on + strandat 1626.139 kb on + strandat 1626.383 kb on - strand, within Dshi_1562at 1626.468 kb on - strand, within Dshi_1562at 1626.561 kb on + strand, within Dshi_1562at 1626.584 kb on - strand, within Dshi_1562at 1626.592 kb on + strand, within Dshi_1562at 1626.592 kb on + strand, within Dshi_1562at 1626.629 kb on - strand, within Dshi_1562at 1626.659 kb on - strand, within Dshi_1562at 1626.684 kb on + strand, within Dshi_1562at 1626.732 kb on + strand, within Dshi_1562at 1626.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.0015 mg/ml
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1,625,370 - Dshi_1561 0.85 -0.4
1,625,370 - Dshi_1561 0.85 +0.5
1,625,607 + -0.5
1,625,838 + -0.6
1,625,915 + -0.3
1,625,985 + -0.1
1,626,139 + -0.2
1,626,383 - Dshi_1562 0.18 -0.8
1,626,468 - Dshi_1562 0.34 -1.4
1,626,561 + Dshi_1562 0.51 -1.6
1,626,584 - Dshi_1562 0.55 -0.3
1,626,592 + Dshi_1562 0.57 -0.6
1,626,592 + Dshi_1562 0.57 -1.1
1,626,629 - Dshi_1562 0.64 +1.0
1,626,659 - Dshi_1562 0.69 -2.2
1,626,684 + Dshi_1562 0.74 -0.9
1,626,732 + Dshi_1562 0.83 -0.2
1,626,886 - -0.3

Or see this region's nucleotide sequence