Experiment: m.b. Spectinomycin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0484 and Dshi_0485 are separated by 49 nucleotides Dshi_0485 and Dshi_0486 are separated by 18 nucleotides Dshi_0486 and Dshi_0487 are separated by 565 nucleotides
Dshi_0484: Dshi_0484 - 40-residue YVTN family beta-propeller repeat protein (RefSeq), at 469,158 to 470,129
_0484
Dshi_0485: Dshi_0485 - hypothetical protein (RefSeq), at 470,179 to 470,616
_0485
Dshi_0486: Dshi_0486 - hypothetical protein (RefSeq), at 470,635 to 470,883
_0486
Dshi_0487: Dshi_0487 - hypothetical protein (RefSeq), at 471,449 to 472,675
_0487
Position (kb) 470
471 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 469.653 kb on - strand, within Dshi_0484 at 469.678 kb on - strand, within Dshi_0484 at 469.712 kb on - strand, within Dshi_0484 at 469.712 kb on - strand, within Dshi_0484 at 469.758 kb on + strand, within Dshi_0484 at 469.758 kb on + strand, within Dshi_0484 at 469.758 kb on + strand, within Dshi_0484 at 469.776 kb on + strand, within Dshi_0484 at 469.797 kb on + strand, within Dshi_0484 at 469.797 kb on + strand, within Dshi_0484 at 469.803 kb on + strand, within Dshi_0484 at 469.805 kb on - strand, within Dshi_0484 at 469.813 kb on + strand, within Dshi_0484 at 469.813 kb on + strand, within Dshi_0484 at 469.821 kb on - strand, within Dshi_0484 at 469.866 kb on - strand, within Dshi_0484 at 469.877 kb on + strand, within Dshi_0484 at 469.887 kb on - strand, within Dshi_0484 at 469.887 kb on - strand, within Dshi_0484 at 469.906 kb on - strand, within Dshi_0484 at 469.906 kb on - strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.953 kb on + strand, within Dshi_0484 at 469.954 kb on + strand, within Dshi_0484 at 469.961 kb on - strand, within Dshi_0484 at 469.962 kb on - strand, within Dshi_0484 at 469.968 kb on + strand, within Dshi_0484 at 469.969 kb on - strand, within Dshi_0484 at 469.969 kb on - strand, within Dshi_0484 at 469.969 kb on - strand, within Dshi_0484 at 469.976 kb on - strand, within Dshi_0484 at 469.984 kb on - strand, within Dshi_0484 at 469.984 kb on - strand, within Dshi_0484 at 470.050 kb on - strand at 470.051 kb on + strand at 470.083 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on - strand at 470.110 kb on - strand at 470.110 kb on - strand at 470.111 kb on - strand at 470.148 kb on + strand at 470.161 kb on - strand at 470.187 kb on + strand at 470.187 kb on + strand at 470.195 kb on - strand at 470.195 kb on - strand at 470.195 kb on - strand at 470.196 kb on - strand at 470.198 kb on + strand at 470.203 kb on + strand at 470.206 kb on - strand at 470.223 kb on + strand, within Dshi_0485 at 470.223 kb on + strand, within Dshi_0485 at 470.244 kb on + strand, within Dshi_0485 at 470.279 kb on + strand, within Dshi_0485 at 470.289 kb on + strand, within Dshi_0485 at 470.314 kb on + strand, within Dshi_0485 at 470.317 kb on - strand, within Dshi_0485 at 470.322 kb on - strand, within Dshi_0485 at 470.344 kb on + strand, within Dshi_0485 at 470.352 kb on + strand, within Dshi_0485 at 470.390 kb on + strand, within Dshi_0485 at 470.396 kb on - strand, within Dshi_0485 at 470.482 kb on + strand, within Dshi_0485 at 470.482 kb on + strand, within Dshi_0485 at 470.497 kb on + strand, within Dshi_0485 at 470.507 kb on + strand, within Dshi_0485 at 470.516 kb on - strand, within Dshi_0485 at 470.557 kb on + strand, within Dshi_0485 at 470.557 kb on + strand, within Dshi_0485 at 470.562 kb on + strand, within Dshi_0485 at 470.565 kb on - strand, within Dshi_0485 at 470.590 kb on - strand at 470.601 kb on - strand at 470.621 kb on + strand at 470.637 kb on - strand at 470.644 kb on + strand at 470.644 kb on + strand at 470.644 kb on + strand at 470.662 kb on + strand, within Dshi_0486 at 470.683 kb on + strand, within Dshi_0486 at 470.696 kb on + strand, within Dshi_0486 at 470.704 kb on - strand, within Dshi_0486 at 470.715 kb on + strand, within Dshi_0486 at 470.721 kb on + strand, within Dshi_0486 at 470.723 kb on - strand, within Dshi_0486 at 470.723 kb on - strand, within Dshi_0486 at 470.728 kb on - strand, within Dshi_0486 at 470.775 kb on + strand, within Dshi_0486 at 470.777 kb on - strand, within Dshi_0486 at 470.792 kb on - strand, within Dshi_0486 at 470.794 kb on + strand, within Dshi_0486 at 470.795 kb on + strand, within Dshi_0486 at 470.797 kb on - strand, within Dshi_0486 at 470.818 kb on + strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.853 kb on + strand, within Dshi_0486 at 470.853 kb on + strand, within Dshi_0486 at 470.853 kb on + strand, within Dshi_0486 at 470.859 kb on - strand at 470.861 kb on - strand at 470.861 kb on - strand at 470.861 kb on - strand at 470.873 kb on - strand at 470.875 kb on + strand at 470.876 kb on - strand at 470.883 kb on + strand at 470.883 kb on + strand at 470.897 kb on + strand at 470.898 kb on - strand at 470.903 kb on - strand at 470.905 kb on - strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.920 kb on + strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.928 kb on - strand at 470.932 kb on + strand at 470.933 kb on - strand at 470.938 kb on + strand at 470.946 kb on + strand at 470.953 kb on - strand at 470.968 kb on + strand at 470.968 kb on + strand at 470.979 kb on + strand at 470.991 kb on - strand at 470.999 kb on + strand at 470.999 kb on + strand at 471.009 kb on - strand at 471.012 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.055 kb on - strand at 471.055 kb on - strand at 471.055 kb on - strand at 471.055 kb on - strand at 471.057 kb on + strand at 471.057 kb on + strand at 471.069 kb on + strand at 471.077 kb on - strand at 471.085 kb on + strand at 471.087 kb on + strand at 471.095 kb on - strand at 471.095 kb on - strand at 471.095 kb on - strand at 471.109 kb on - strand at 471.117 kb on + strand at 471.132 kb on + strand at 471.139 kb on - strand at 471.140 kb on - strand at 471.162 kb on + strand at 471.168 kb on + strand at 471.170 kb on - strand at 471.170 kb on - strand at 471.170 kb on - strand at 471.170 kb on - strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.176 kb on + strand at 471.181 kb on + strand at 471.189 kb on - strand at 471.194 kb on + strand at 471.199 kb on + strand at 471.199 kb on + strand at 471.211 kb on + strand at 471.220 kb on + strand at 471.220 kb on + strand at 471.220 kb on + strand at 471.224 kb on - strand at 471.224 kb on - strand at 471.228 kb on - strand at 471.228 kb on - strand at 471.237 kb on + strand at 471.237 kb on + strand at 471.238 kb on + strand at 471.242 kb on + strand at 471.242 kb on + strand at 471.242 kb on + strand at 471.242 kb on + strand at 471.245 kb on - strand at 471.247 kb on - strand at 471.250 kb on - strand at 471.260 kb on - strand at 471.266 kb on - strand at 471.332 kb on - strand at 471.354 kb on - strand at 471.369 kb on - strand at 471.372 kb on + strand at 471.388 kb on - strand at 471.388 kb on - strand at 471.390 kb on + strand at 471.390 kb on + strand at 471.390 kb on + strand at 471.398 kb on - strand at 471.398 kb on - strand at 471.398 kb on - strand at 471.399 kb on - strand at 471.417 kb on + strand at 471.418 kb on - strand at 471.421 kb on - strand at 471.441 kb on + strand at 471.447 kb on + strand at 471.449 kb on - strand at 471.449 kb on - strand at 471.449 kb on - strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.466 kb on + strand at 471.510 kb on + strand at 471.515 kb on + strand at 471.515 kb on + strand at 471.518 kb on - strand at 471.523 kb on + strand at 471.523 kb on - strand at 471.528 kb on - strand at 471.544 kb on + strand at 471.544 kb on + strand at 471.544 kb on + strand at 471.546 kb on - strand at 471.549 kb on + strand at 471.549 kb on + strand at 471.549 kb on + strand at 471.552 kb on - strand at 471.557 kb on - strand at 471.557 kb on - strand at 471.557 kb on - strand at 471.562 kb on - strand at 471.576 kb on + strand, within Dshi_0487 at 471.577 kb on + strand, within Dshi_0487 at 471.577 kb on + strand, within Dshi_0487 at 471.586 kb on - strand, within Dshi_0487 at 471.586 kb on - strand, within Dshi_0487 at 471.617 kb on - strand, within Dshi_0487 at 471.641 kb on + strand, within Dshi_0487 at 471.641 kb on + strand, within Dshi_0487 at 471.668 kb on + strand, within Dshi_0487 at 471.678 kb on + strand, within Dshi_0487 at 471.692 kb on - strand, within Dshi_0487 at 471.704 kb on + strand, within Dshi_0487 at 471.723 kb on + strand, within Dshi_0487 at 471.764 kb on + strand, within Dshi_0487 at 471.772 kb on - strand, within Dshi_0487 at 471.772 kb on - strand, within Dshi_0487 at 471.790 kb on - strand, within Dshi_0487 at 471.861 kb on - strand, within Dshi_0487
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.0015 mg/ml remove 469,653 - Dshi_0484 0.51 -0.3 469,678 - Dshi_0484 0.53 -1.5 469,712 - Dshi_0484 0.57 +1.2 469,712 - Dshi_0484 0.57 -0.5 469,758 + Dshi_0484 0.62 +0.9 469,758 + Dshi_0484 0.62 +0.9 469,758 + Dshi_0484 0.62 +0.4 469,776 + Dshi_0484 0.64 -0.9 469,797 + Dshi_0484 0.66 +0.2 469,797 + Dshi_0484 0.66 -0.8 469,803 + Dshi_0484 0.66 -0.1 469,805 - Dshi_0484 0.67 -0.6 469,813 + Dshi_0484 0.67 +0.6 469,813 + Dshi_0484 0.67 +0.8 469,821 - Dshi_0484 0.68 -0.8 469,866 - Dshi_0484 0.73 -0.5 469,877 + Dshi_0484 0.74 +0.3 469,887 - Dshi_0484 0.75 +0.8 469,887 - Dshi_0484 0.75 -0.5 469,906 - Dshi_0484 0.77 +0.1 469,906 - Dshi_0484 0.77 -0.8 469,939 + Dshi_0484 0.80 +0.5 469,939 + Dshi_0484 0.80 +0.4 469,939 + Dshi_0484 0.80 -0.5 469,939 + Dshi_0484 0.80 +0.2 469,939 + Dshi_0484 0.80 +0.2 469,939 + Dshi_0484 0.80 -0.6 469,939 + Dshi_0484 0.80 -0.2 469,939 + Dshi_0484 0.80 +0.2 469,939 + Dshi_0484 0.80 -0.9 469,939 + Dshi_0484 0.80 -0.1 469,939 + Dshi_0484 0.80 +0.1 469,939 + Dshi_0484 0.80 +0.6 469,939 + Dshi_0484 0.80 -0.1 469,939 + Dshi_0484 0.80 -0.6 469,947 - Dshi_0484 0.81 +2.8 469,947 - Dshi_0484 0.81 +1.2 469,947 - Dshi_0484 0.81 +0.2 469,947 - Dshi_0484 0.81 -0.4 469,947 - Dshi_0484 0.81 +0.2 469,947 - Dshi_0484 0.81 +0.2 469,947 - Dshi_0484 0.81 -0.5 469,947 - Dshi_0484 0.81 -0.1 469,947 - Dshi_0484 0.81 +1.1 469,947 - Dshi_0484 0.81 +0.5 469,947 - Dshi_0484 0.81 +0.9 469,953 + Dshi_0484 0.82 -0.1 469,954 + Dshi_0484 0.82 +0.4 469,961 - Dshi_0484 0.83 -2.0 469,962 - Dshi_0484 0.83 -0.5 469,968 + Dshi_0484 0.83 +0.1 469,969 - Dshi_0484 0.83 +0.5 469,969 - Dshi_0484 0.83 -0.6 469,969 - Dshi_0484 0.83 -0.1 469,976 - Dshi_0484 0.84 -0.3 469,984 - Dshi_0484 0.85 +0.4 469,984 - Dshi_0484 0.85 +0.7 470,050 - -0.5 470,051 + +0.0 470,083 + -0.6 470,102 + +0.3 470,102 + -2.4 470,102 + -1.2 470,102 + +0.2 470,102 + -0.1 470,102 + +0.9 470,102 + -0.4 470,102 + -1.0 470,102 + +0.3 470,102 - -0.4 470,110 - +0.4 470,110 - +0.3 470,111 - -0.4 470,148 + +0.2 470,161 - +1.0 470,187 + +0.0 470,187 + +2.0 470,195 - +0.3 470,195 - -0.0 470,195 - +0.2 470,196 - +0.2 470,198 + -1.0 470,203 + -1.8 470,206 - -0.5 470,223 + Dshi_0485 0.10 -0.0 470,223 + Dshi_0485 0.10 -0.3 470,244 + Dshi_0485 0.15 +0.0 470,279 + Dshi_0485 0.23 -0.0 470,289 + Dshi_0485 0.25 -0.2 470,314 + Dshi_0485 0.31 +0.6 470,317 - Dshi_0485 0.32 +0.2 470,322 - Dshi_0485 0.33 -0.1 470,344 + Dshi_0485 0.38 +0.2 470,352 + Dshi_0485 0.39 +0.2 470,390 + Dshi_0485 0.48 -0.3 470,396 - Dshi_0485 0.50 -0.0 470,482 + Dshi_0485 0.69 -0.2 470,482 + Dshi_0485 0.69 -0.7 470,497 + Dshi_0485 0.73 -0.9 470,507 + Dshi_0485 0.75 -0.3 470,516 - Dshi_0485 0.77 +0.6 470,557 + Dshi_0485 0.86 +0.8 470,557 + Dshi_0485 0.86 +0.6 470,562 + Dshi_0485 0.87 +0.2 470,565 - Dshi_0485 0.88 -0.4 470,590 - -0.8 470,601 - +1.4 470,621 + -0.5 470,637 - +0.1 470,644 + -2.0 470,644 + +0.2 470,644 + +0.1 470,662 + Dshi_0486 0.11 +0.7 470,683 + Dshi_0486 0.19 +0.7 470,696 + Dshi_0486 0.24 -0.6 470,704 - Dshi_0486 0.28 -0.6 470,715 + Dshi_0486 0.32 +1.2 470,721 + Dshi_0486 0.35 +1.0 470,723 - Dshi_0486 0.35 +1.0 470,723 - Dshi_0486 0.35 -0.8 470,728 - Dshi_0486 0.37 -0.6 470,775 + Dshi_0486 0.56 -0.3 470,777 - Dshi_0486 0.57 +0.0 470,792 - Dshi_0486 0.63 -0.0 470,794 + Dshi_0486 0.64 -0.1 470,795 + Dshi_0486 0.64 +0.5 470,797 - Dshi_0486 0.65 +0.8 470,818 + Dshi_0486 0.73 +2.8 470,826 - Dshi_0486 0.77 -0.3 470,826 - Dshi_0486 0.77 +0.0 470,826 - Dshi_0486 0.77 +0.4 470,826 - Dshi_0486 0.77 +0.4 470,853 + Dshi_0486 0.88 -0.5 470,853 + Dshi_0486 0.88 +0.0 470,853 + Dshi_0486 0.88 -0.4 470,859 - -1.8 470,861 - +0.2 470,861 - -0.2 470,861 - +1.2 470,873 - -0.5 470,875 + +0.2 470,876 - -0.5 470,883 + -1.0 470,883 + +0.6 470,897 + -0.1 470,898 - -1.0 470,903 - +0.6 470,905 - +0.0 470,919 + +0.2 470,919 + +0.2 470,919 + -0.5 470,919 + -0.3 470,919 + +0.8 470,920 + -0.2 470,927 - +0.2 470,927 - -0.2 470,927 - -0.2 470,927 - -1.6 470,927 - -0.9 470,927 - +0.3 470,927 - +0.7 470,927 - +0.7 470,927 - +0.5 470,927 - -1.4 470,928 - -0.8 470,932 + -0.4 470,933 - +0.5 470,938 + +0.4 470,946 + -0.4 470,953 - +0.6 470,968 + +0.2 470,968 + -0.4 470,979 + +0.2 470,991 - +0.2 470,999 + -0.2 470,999 + +2.2 471,009 - -0.3 471,012 + -0.0 471,047 + +0.5 471,047 + +0.1 471,047 + +0.1 471,047 + +0.9 471,047 + +0.2 471,055 - +0.2 471,055 - +0.8 471,055 - -0.5 471,055 - -0.1 471,057 + +0.1 471,057 + -0.3 471,069 + -0.1 471,077 - -0.2 471,085 + -1.9 471,087 + -0.5 471,095 - +0.5 471,095 - +0.7 471,095 - -0.2 471,109 - -0.3 471,117 + +0.0 471,132 + +0.2 471,139 - -0.3 471,140 - -0.3 471,162 + -0.3 471,168 + -1.2 471,170 - +0.3 471,170 - -0.4 471,170 - -0.6 471,170 - +0.0 471,174 + +1.0 471,174 + +0.2 471,174 + -1.6 471,176 + -0.5 471,181 + +0.1 471,189 - +0.4 471,194 + -0.2 471,199 + -0.6 471,199 + -0.1 471,211 + +0.9 471,220 + +0.3 471,220 + -0.6 471,220 + -0.1 471,224 - -0.3 471,224 - +0.6 471,228 - -0.1 471,228 - -0.4 471,237 + -0.2 471,237 + -1.4 471,238 + -0.3 471,242 + -0.7 471,242 + +0.9 471,242 + -0.0 471,242 + +0.5 471,245 - +0.2 471,247 - -0.3 471,250 - +0.5 471,260 - -0.5 471,266 - -1.8 471,332 - +0.3 471,354 - +0.6 471,369 - -1.1 471,372 + +0.7 471,388 - -1.2 471,388 - +0.4 471,390 + +1.8 471,390 + +0.2 471,390 + -0.3 471,398 - -0.3 471,398 - -0.7 471,398 - +0.2 471,399 - -0.5 471,417 + +0.4 471,418 - -0.3 471,421 - -0.1 471,441 + -0.4 471,447 + +1.2 471,449 - +1.2 471,449 - -0.7 471,449 - +0.2 471,450 + +0.5 471,450 + +0.3 471,450 + +1.2 471,450 + +0.1 471,450 + +0.2 471,450 + +0.1 471,458 - -0.2 471,458 - +0.0 471,458 - -0.6 471,458 - +0.7 471,458 - -0.6 471,458 - +0.6 471,466 + -0.9 471,510 + -0.4 471,515 + -0.1 471,515 + +0.8 471,518 - -1.5 471,523 + +0.0 471,523 - +1.0 471,528 - -0.3 471,544 + -0.2 471,544 + -1.9 471,544 + -0.8 471,546 - +0.1 471,549 + -0.2 471,549 + +0.5 471,549 + +0.4 471,552 - +0.5 471,557 - -0.8 471,557 - +0.2 471,557 - -0.9 471,562 - +0.4 471,576 + Dshi_0487 0.10 -0.2 471,577 + Dshi_0487 0.10 -1.4 471,577 + Dshi_0487 0.10 +0.2 471,586 - Dshi_0487 0.11 -0.2 471,586 - Dshi_0487 0.11 +0.1 471,617 - Dshi_0487 0.14 -0.0 471,641 + Dshi_0487 0.16 -0.4 471,641 + Dshi_0487 0.16 +0.4 471,668 + Dshi_0487 0.18 -0.1 471,678 + Dshi_0487 0.19 +0.9 471,692 - Dshi_0487 0.20 -0.5 471,704 + Dshi_0487 0.21 -0.6 471,723 + Dshi_0487 0.22 +0.2 471,764 + Dshi_0487 0.26 -0.3 471,772 - Dshi_0487 0.26 -0.4 471,772 - Dshi_0487 0.26 +0.1 471,790 - Dshi_0487 0.28 -0.1 471,861 - Dshi_0487 0.34 -0.5
Or see this region's nucleotide sequence