Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0432

Experiment: m.b. Spectinomycin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0431 and Dshi_0432 are separated by 15 nucleotidesDshi_0432 and Dshi_0433 are separated by 13 nucleotides Dshi_0431: Dshi_0431 - C4-dicarboxylate anaerobic carrier (RefSeq), at 422,213 to 423,661 _0431 Dshi_0432: Dshi_0432 - Arginine deiminase (RefSeq), at 423,677 to 424,906 _0432 Dshi_0433: Dshi_0433 - ornithine carbamoyltransferase (RefSeq), at 424,920 to 425,921 _0433 Position (kb) 423 424 425Strain fitness (log2 ratio) -2 -1 0 1at 422.784 kb on + strand, within Dshi_0431at 422.798 kb on - strand, within Dshi_0431at 422.924 kb on - strand, within Dshi_0431at 422.939 kb on - strand, within Dshi_0431at 423.028 kb on + strand, within Dshi_0431at 423.090 kb on - strand, within Dshi_0431at 423.103 kb on + strand, within Dshi_0431at 423.106 kb on - strand, within Dshi_0431at 423.112 kb on - strand, within Dshi_0431at 423.116 kb on + strand, within Dshi_0431at 423.124 kb on - strand, within Dshi_0431at 423.124 kb on - strand, within Dshi_0431at 423.165 kb on + strand, within Dshi_0431at 423.232 kb on + strand, within Dshi_0431at 423.299 kb on + strand, within Dshi_0431at 423.304 kb on + strand, within Dshi_0431at 423.377 kb on + strand, within Dshi_0431at 423.385 kb on - strand, within Dshi_0431at 423.410 kb on - strand, within Dshi_0431at 423.427 kb on + strand, within Dshi_0431at 423.491 kb on - strand, within Dshi_0431at 423.515 kb on - strand, within Dshi_0431at 423.625 kb on + strandat 423.656 kb on - strandat 423.668 kb on - strandat 423.684 kb on + strandat 423.690 kb on + strandat 423.805 kb on + strand, within Dshi_0432at 423.824 kb on + strand, within Dshi_0432at 423.832 kb on - strand, within Dshi_0432at 423.866 kb on - strand, within Dshi_0432at 423.901 kb on - strand, within Dshi_0432at 423.903 kb on - strand, within Dshi_0432at 423.915 kb on + strand, within Dshi_0432at 423.923 kb on - strand, within Dshi_0432at 424.017 kb on + strand, within Dshi_0432at 424.025 kb on - strand, within Dshi_0432at 424.097 kb on + strand, within Dshi_0432at 424.100 kb on - strand, within Dshi_0432at 424.113 kb on + strand, within Dshi_0432at 424.121 kb on - strand, within Dshi_0432at 424.179 kb on - strand, within Dshi_0432at 424.185 kb on + strand, within Dshi_0432at 424.290 kb on - strand, within Dshi_0432at 424.305 kb on + strand, within Dshi_0432at 424.328 kb on - strand, within Dshi_0432at 424.332 kb on - strand, within Dshi_0432at 424.356 kb on + strand, within Dshi_0432at 424.512 kb on - strand, within Dshi_0432at 424.533 kb on + strand, within Dshi_0432at 424.541 kb on - strand, within Dshi_0432at 424.610 kb on + strand, within Dshi_0432at 424.627 kb on + strand, within Dshi_0432at 424.633 kb on + strand, within Dshi_0432at 424.646 kb on + strand, within Dshi_0432at 424.675 kb on + strand, within Dshi_0432at 424.686 kb on + strand, within Dshi_0432at 424.686 kb on + strand, within Dshi_0432at 424.899 kb on + strandat 424.899 kb on + strandat 424.901 kb on + strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.909 kb on - strandat 424.924 kb on + strandat 424.948 kb on + strandat 425.043 kb on - strand, within Dshi_0433at 425.043 kb on - strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.122 kb on + strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.130 kb on - strand, within Dshi_0433at 425.139 kb on + strand, within Dshi_0433at 425.157 kb on - strand, within Dshi_0433at 425.188 kb on - strand, within Dshi_0433at 425.216 kb on - strand, within Dshi_0433at 425.275 kb on - strand, within Dshi_0433at 425.307 kb on - strand, within Dshi_0433at 425.317 kb on + strand, within Dshi_0433at 425.325 kb on - strand, within Dshi_0433at 425.336 kb on - strand, within Dshi_0433at 425.391 kb on + strand, within Dshi_0433at 425.415 kb on + strand, within Dshi_0433at 425.422 kb on + strand, within Dshi_0433at 425.428 kb on - strand, within Dshi_0433at 425.435 kb on - strand, within Dshi_0433at 425.450 kb on + strand, within Dshi_0433at 425.459 kb on + strand, within Dshi_0433at 425.467 kb on + strand, within Dshi_0433at 425.492 kb on + strandat 425.497 kb on + strand, within Dshi_0433at 425.499 kb on - strand, within Dshi_0433at 425.505 kb on - strand, within Dshi_0433at 425.526 kb on - strand, within Dshi_0433at 425.536 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.548 kb on - strand, within Dshi_0433at 425.564 kb on + strand, within Dshi_0433at 425.574 kb on + strand, within Dshi_0433at 425.630 kb on + strand, within Dshi_0433at 425.682 kb on - strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.684 kb on + strand, within Dshi_0433at 425.784 kb on + strand, within Dshi_0433at 425.803 kb on - strand, within Dshi_0433at 425.817 kb on - strand, within Dshi_0433at 425.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.0015 mg/ml
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422,784 + Dshi_0431 0.39 -0.4
422,798 - Dshi_0431 0.40 -0.0
422,924 - Dshi_0431 0.49 +0.6
422,939 - Dshi_0431 0.50 +0.0
423,028 + Dshi_0431 0.56 -1.1
423,090 - Dshi_0431 0.61 -2.4
423,103 + Dshi_0431 0.61 +0.1
423,106 - Dshi_0431 0.62 -0.2
423,112 - Dshi_0431 0.62 +0.0
423,116 + Dshi_0431 0.62 +0.4
423,124 - Dshi_0431 0.63 -1.9
423,124 - Dshi_0431 0.63 +0.2
423,165 + Dshi_0431 0.66 -0.4
423,232 + Dshi_0431 0.70 -0.6
423,299 + Dshi_0431 0.75 +0.1
423,304 + Dshi_0431 0.75 +0.2
423,377 + Dshi_0431 0.80 -0.2
423,385 - Dshi_0431 0.81 -0.4
423,410 - Dshi_0431 0.83 -0.1
423,427 + Dshi_0431 0.84 +0.6
423,491 - Dshi_0431 0.88 -0.4
423,515 - Dshi_0431 0.90 +0.2
423,625 + -0.9
423,656 - -0.4
423,668 - -0.6
423,684 + +0.6
423,690 + +0.1
423,805 + Dshi_0432 0.10 -0.3
423,824 + Dshi_0432 0.12 -0.6
423,832 - Dshi_0432 0.13 -0.8
423,866 - Dshi_0432 0.15 +0.6
423,901 - Dshi_0432 0.18 -0.6
423,903 - Dshi_0432 0.18 -0.6
423,915 + Dshi_0432 0.19 +0.2
423,923 - Dshi_0432 0.20 -0.4
424,017 + Dshi_0432 0.28 +0.0
424,025 - Dshi_0432 0.28 +0.7
424,097 + Dshi_0432 0.34 -0.7
424,100 - Dshi_0432 0.34 -0.4
424,113 + Dshi_0432 0.35 +0.8
424,121 - Dshi_0432 0.36 -0.4
424,179 - Dshi_0432 0.41 -1.0
424,185 + Dshi_0432 0.41 -0.0
424,290 - Dshi_0432 0.50 -0.4
424,305 + Dshi_0432 0.51 -1.0
424,328 - Dshi_0432 0.53 -1.4
424,332 - Dshi_0432 0.53 +0.6
424,356 + Dshi_0432 0.55 -0.8
424,512 - Dshi_0432 0.68 -0.6
424,533 + Dshi_0432 0.70 -0.2
424,541 - Dshi_0432 0.70 +0.6
424,610 + Dshi_0432 0.76 -1.8
424,627 + Dshi_0432 0.77 +1.6
424,633 + Dshi_0432 0.78 -0.4
424,646 + Dshi_0432 0.79 -0.2
424,675 + Dshi_0432 0.81 -0.1
424,686 + Dshi_0432 0.82 -0.0
424,686 + Dshi_0432 0.82 -0.4
424,899 + +0.0
424,899 + +0.6
424,901 + -0.3
424,909 - -0.7
424,909 - -0.8
424,909 - -0.2
424,909 - +0.8
424,924 + -0.1
424,948 + -0.2
425,043 - Dshi_0433 0.12 -0.2
425,043 - Dshi_0433 0.12 -0.5
425,122 + Dshi_0433 0.20 +0.6
425,122 + Dshi_0433 0.20 -1.6
425,122 + Dshi_0433 0.20 +0.7
425,122 + Dshi_0433 0.20 -0.1
425,130 - Dshi_0433 0.21 +0.2
425,130 - Dshi_0433 0.21 +0.7
425,139 + Dshi_0433 0.22 -0.3
425,157 - Dshi_0433 0.24 -0.4
425,188 - Dshi_0433 0.27 +0.1
425,216 - Dshi_0433 0.30 -0.8
425,275 - Dshi_0433 0.35 +0.1
425,307 - Dshi_0433 0.39 +0.1
425,317 + Dshi_0433 0.40 +0.2
425,325 - Dshi_0433 0.40 +0.2
425,336 - Dshi_0433 0.42 +0.5
425,391 + Dshi_0433 0.47 +0.9
425,415 + Dshi_0433 0.49 +0.3
425,422 + Dshi_0433 0.50 +0.2
425,428 - Dshi_0433 0.51 +0.4
425,435 - Dshi_0433 0.51 -0.1
425,450 + Dshi_0433 0.53 -0.3
425,459 + Dshi_0433 0.54 -0.3
425,467 + Dshi_0433 0.55 +0.1
425,492 + -0.1
425,497 + Dshi_0433 0.58 -0.9
425,499 - Dshi_0433 0.58 -1.1
425,505 - Dshi_0433 0.58 -0.4
425,526 - Dshi_0433 0.60 -0.3
425,536 - Dshi_0433 0.61 -0.1
425,548 - Dshi_0433 0.63 -0.5
425,548 - Dshi_0433 0.63 +0.0
425,548 - Dshi_0433 0.63 -0.2
425,564 + Dshi_0433 0.64 -0.6
425,574 + Dshi_0433 0.65 -0.0
425,630 + Dshi_0433 0.71 -0.3
425,682 - Dshi_0433 0.76 -0.1
425,684 + Dshi_0433 0.76 -0.3
425,684 + Dshi_0433 0.76 +0.6
425,784 + Dshi_0433 0.86 +0.1
425,803 - Dshi_0433 0.88 +0.1
425,817 - Dshi_0433 0.90 -0.2
425,898 - -1.2

Or see this region's nucleotide sequence