Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06168 and H281DRAFT_06169 are separated by 28 nucleotides H281DRAFT_06169 and H281DRAFT_06170 are separated by 12 nucleotides H281DRAFT_06170 and H281DRAFT_06171 are separated by 86 nucleotides
H281DRAFT_06168: H281DRAFT_06168 - hypothetical protein, at 61,128 to 61,640
_06168
H281DRAFT_06169: H281DRAFT_06169 - Integral membrane protein CcmA involved in cell shape determination, at 61,669 to 62,061
_06169
H281DRAFT_06170: H281DRAFT_06170 - hypothetical protein, at 62,074 to 62,901
_06170
H281DRAFT_06171: H281DRAFT_06171 - protein of unknown function (DUF1845), at 62,988 to 63,572
_06171
Position (kb) 62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 61.138 kb on - strand at 61.152 kb on - strand at 61.152 kb on - strand at 61.152 kb on - strand at 61.152 kb on - strand at 61.308 kb on - strand, within H281DRAFT_06168 at 61.591 kb on - strand at 61.849 kb on + strand, within H281DRAFT_06169 at 61.850 kb on - strand, within H281DRAFT_06169 at 62.044 kb on - strand at 62.313 kb on + strand, within H281DRAFT_06170 at 62.314 kb on - strand, within H281DRAFT_06170 at 62.363 kb on - strand, within H281DRAFT_06170 at 62.864 kb on + strand at 62.865 kb on - strand at 63.059 kb on + strand, within H281DRAFT_06171 at 63.231 kb on - strand, within H281DRAFT_06171 at 63.367 kb on + strand, within H281DRAFT_06171 at 63.367 kb on + strand, within H281DRAFT_06171 at 63.368 kb on - strand, within H281DRAFT_06171 at 63.406 kb on + strand, within H281DRAFT_06171 at 63.426 kb on - strand, within H281DRAFT_06171 at 63.426 kb on - strand, within H281DRAFT_06171 at 63.480 kb on - strand, within H281DRAFT_06171 at 63.480 kb on - strand, within H281DRAFT_06171 at 63.575 kb on + strand at 63.673 kb on + strand at 63.694 kb on + strand at 63.695 kb on - strand at 63.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 61,138 - +0.0 61,152 - +0.7 61,152 - +0.5 61,152 - -0.5 61,152 - -0.4 61,308 - H281DRAFT_06168 0.35 +0.2 61,591 - -1.3 61,849 + H281DRAFT_06169 0.46 +0.5 61,850 - H281DRAFT_06169 0.46 -0.4 62,044 - +0.2 62,313 + H281DRAFT_06170 0.29 +1.0 62,314 - H281DRAFT_06170 0.29 +1.2 62,363 - H281DRAFT_06170 0.35 +0.0 62,864 + +0.3 62,865 - +0.4 63,059 + H281DRAFT_06171 0.12 -0.7 63,231 - H281DRAFT_06171 0.42 -2.9 63,367 + H281DRAFT_06171 0.65 +0.3 63,367 + H281DRAFT_06171 0.65 +0.3 63,368 - H281DRAFT_06171 0.65 +0.1 63,406 + H281DRAFT_06171 0.71 -0.2 63,426 - H281DRAFT_06171 0.75 +0.3 63,426 - H281DRAFT_06171 0.75 +0.1 63,480 - H281DRAFT_06171 0.84 -0.0 63,480 - H281DRAFT_06171 0.84 -0.5 63,575 + +1.1 63,673 + +0.1 63,694 + +0.5 63,695 - +1.1 63,761 + +0.2
Or see this region's nucleotide sequence