Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05535

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05533 and H281DRAFT_05534 are separated by 38 nucleotidesH281DRAFT_05534 and H281DRAFT_05535 overlap by 7 nucleotidesH281DRAFT_05535 and H281DRAFT_05536 are separated by 8 nucleotides H281DRAFT_05533: H281DRAFT_05533 - putative spermidine/putrescine transport system substrate-binding protein, at 117,723 to 118,808 _05533 H281DRAFT_05534: H281DRAFT_05534 - Zn-dependent dipeptidase, dipeptidase homolog, at 118,847 to 119,812 _05534 H281DRAFT_05535: H281DRAFT_05535 - YD repeat-containing protein, at 119,806 to 120,549 _05535 H281DRAFT_05536: H281DRAFT_05536 - hypothetical protein, at 120,558 to 122,282 _05536 Position (kb) 119 120 121Strain fitness (log2 ratio) -1 0 1at 118.822 kb on - strandat 119.348 kb on - strand, within H281DRAFT_05534at 119.485 kb on - strand, within H281DRAFT_05534at 119.641 kb on + strand, within H281DRAFT_05534at 119.873 kb on + strandat 119.970 kb on - strand, within H281DRAFT_05535at 120.147 kb on - strand, within H281DRAFT_05535at 120.301 kb on - strand, within H281DRAFT_05535at 120.301 kb on - strand, within H281DRAFT_05535at 120.505 kb on + strandat 120.721 kb on - strandat 120.985 kb on + strand, within H281DRAFT_05536at 120.986 kb on - strand, within H281DRAFT_05536at 121.293 kb on + strand, within H281DRAFT_05536

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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118,822 - -0.3
119,348 - H281DRAFT_05534 0.52 +0.3
119,485 - H281DRAFT_05534 0.66 -1.1
119,641 + H281DRAFT_05534 0.82 -0.2
119,873 + +0.4
119,970 - H281DRAFT_05535 0.22 +0.8
120,147 - H281DRAFT_05535 0.46 +0.6
120,301 - H281DRAFT_05535 0.67 +1.0
120,301 - H281DRAFT_05535 0.67 +0.5
120,505 + +0.7
120,721 - -0.3
120,985 + H281DRAFT_05536 0.25 -1.7
120,986 - H281DRAFT_05536 0.25 +1.2
121,293 + H281DRAFT_05536 0.43 +0.4

Or see this region's nucleotide sequence