Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03460

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03459 and H281DRAFT_03460 are separated by 203 nucleotidesH281DRAFT_03460 and H281DRAFT_03461 are separated by 20 nucleotides H281DRAFT_03459: H281DRAFT_03459 - methyl-accepting chemotaxis protein, at 541,938 to 543,701 _03459 H281DRAFT_03460: H281DRAFT_03460 - Protein of unknown function (DUF2950), at 543,905 to 544,849 _03460 H281DRAFT_03461: H281DRAFT_03461 - Predicted membrane protein, at 544,870 to 546,159 _03461 Position (kb) 543 544 545Strain fitness (log2 ratio) -2 -1 0 1at 543.613 kb on + strandat 543.614 kb on - strandat 543.725 kb on + strandat 543.725 kb on + strandat 543.726 kb on - strandat 544.170 kb on + strand, within H281DRAFT_03460at 545.552 kb on + strand, within H281DRAFT_03461at 545.552 kb on + strand, within H281DRAFT_03461at 545.604 kb on + strand, within H281DRAFT_03461at 545.607 kb on - strand, within H281DRAFT_03461

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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543,613 + +1.2
543,614 - +0.6
543,725 + +0.3
543,725 + -0.1
543,726 - +0.3
544,170 + H281DRAFT_03460 0.28 +0.6
545,552 + H281DRAFT_03461 0.53 -0.5
545,552 + H281DRAFT_03461 0.53 -2.2
545,604 + H281DRAFT_03461 0.57 +0.3
545,607 - H281DRAFT_03461 0.57 +0.4

Or see this region's nucleotide sequence