Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02571 and H281DRAFT_02572 are separated by 82 nucleotides H281DRAFT_02572 and H281DRAFT_02573 overlap by 4 nucleotides H281DRAFT_02573 and H281DRAFT_02574 are separated by 2 nucleotides
H281DRAFT_02571: H281DRAFT_02571 - amino acid ABC transporter substrate-binding protein, PAAT family, at 146,461 to 147,231
_02571
H281DRAFT_02572: H281DRAFT_02572 - amino acid ABC transporter membrane protein, PAAT family, at 147,314 to 147,970
_02572
H281DRAFT_02573: H281DRAFT_02573 - amino acid ABC transporter ATP-binding protein, PAAT family, at 147,967 to 148,725
_02573
H281DRAFT_02574: H281DRAFT_02574 - Glycine/D-amino acid oxidase (deaminating), at 148,728 to 150,023
_02574
Position (kb) 147
148
149 Strain fitness (log2 ratio) -1
0
1 at 147.254 kb on + strand at 147.301 kb on - strand at 147.301 kb on - strand at 147.527 kb on - strand, within H281DRAFT_02572 at 147.555 kb on + strand, within H281DRAFT_02572 at 147.556 kb on - strand, within H281DRAFT_02572 at 147.556 kb on - strand, within H281DRAFT_02572 at 147.872 kb on + strand, within H281DRAFT_02572 at 147.873 kb on - strand, within H281DRAFT_02572 at 148.124 kb on - strand, within H281DRAFT_02573 at 148.276 kb on + strand, within H281DRAFT_02573 at 149.250 kb on + strand, within H281DRAFT_02574 at 149.301 kb on + strand, within H281DRAFT_02574 at 149.301 kb on + strand, within H281DRAFT_02574 at 149.599 kb on + strand, within H281DRAFT_02574
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 147,254 + +0.1 147,301 - +0.2 147,301 - -0.1 147,527 - H281DRAFT_02572 0.32 +0.4 147,555 + H281DRAFT_02572 0.37 +0.8 147,556 - H281DRAFT_02572 0.37 +0.4 147,556 - H281DRAFT_02572 0.37 -0.6 147,872 + H281DRAFT_02572 0.85 -0.3 147,873 - H281DRAFT_02572 0.85 +0.0 148,124 - H281DRAFT_02573 0.21 +0.6 148,276 + H281DRAFT_02573 0.41 +0.7 149,250 + H281DRAFT_02574 0.40 +0.5 149,301 + H281DRAFT_02574 0.44 -0.1 149,301 + H281DRAFT_02574 0.44 -0.0 149,599 + H281DRAFT_02574 0.67 +0.4
Or see this region's nucleotide sequence