Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02532

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02530 and H281DRAFT_02531 are separated by 56 nucleotidesH281DRAFT_02531 and H281DRAFT_02532 are separated by 14 nucleotidesH281DRAFT_02532 and H281DRAFT_02533 are separated by 12 nucleotidesH281DRAFT_02533 and H281DRAFT_02534 are separated by 51 nucleotides H281DRAFT_02530: H281DRAFT_02530 - transcriptional regulator, IclR family, at 106,073 to 106,864 _02530 H281DRAFT_02531: H281DRAFT_02531 - Acyl dehydratase, at 106,921 to 107,406 _02531 H281DRAFT_02532: H281DRAFT_02532 - Sugar phosphate isomerase/epimerase, at 107,421 to 108,284 _02532 H281DRAFT_02533: H281DRAFT_02533 - Acyl dehydratase, at 108,297 to 108,758 _02533 H281DRAFT_02534: H281DRAFT_02534 - propionate CoA-transferase, at 108,810 to 110,426 _02534 Position (kb) 107 108 109Strain fitness (log2 ratio) -2 -1 0 1 2at 106.428 kb on + strand, within H281DRAFT_02530at 106.429 kb on - strand, within H281DRAFT_02530at 107.005 kb on + strand, within H281DRAFT_02531at 107.830 kb on + strand, within H281DRAFT_02532at 107.890 kb on - strand, within H281DRAFT_02532at 107.890 kb on - strand, within H281DRAFT_02532at 107.995 kb on - strand, within H281DRAFT_02532at 108.282 kb on + strandat 108.339 kb on + strandat 108.340 kb on - strandat 108.341 kb on + strandat 108.341 kb on + strandat 108.489 kb on + strand, within H281DRAFT_02533at 108.490 kb on - strand, within H281DRAFT_02533at 108.490 kb on - strand, within H281DRAFT_02533at 108.492 kb on - strand, within H281DRAFT_02533at 108.492 kb on - strand, within H281DRAFT_02533at 108.492 kb on - strand, within H281DRAFT_02533at 108.783 kb on + strandat 108.822 kb on - strandat 108.822 kb on - strandat 109.036 kb on + strand, within H281DRAFT_02534at 109.037 kb on - strand, within H281DRAFT_02534

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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106,428 + H281DRAFT_02530 0.45 +0.0
106,429 - H281DRAFT_02530 0.45 -0.7
107,005 + H281DRAFT_02531 0.17 -0.6
107,830 + H281DRAFT_02532 0.47 +2.2
107,890 - H281DRAFT_02532 0.54 -0.2
107,890 - H281DRAFT_02532 0.54 -1.9
107,995 - H281DRAFT_02532 0.66 -0.1
108,282 + +0.4
108,339 + +0.3
108,340 - +0.1
108,341 + +0.3
108,341 + -0.7
108,489 + H281DRAFT_02533 0.42 +0.4
108,490 - H281DRAFT_02533 0.42 -0.6
108,490 - H281DRAFT_02533 0.42 -0.3
108,492 - H281DRAFT_02533 0.42 -0.0
108,492 - H281DRAFT_02533 0.42 +0.3
108,492 - H281DRAFT_02533 0.42 -0.1
108,783 + -0.8
108,822 - -1.5
108,822 - +0.1
109,036 + H281DRAFT_02534 0.14 -0.2
109,037 - H281DRAFT_02534 0.14 +0.1

Or see this region's nucleotide sequence