Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02479

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02478 and H281DRAFT_02479 are separated by 125 nucleotidesH281DRAFT_02479 and H281DRAFT_02480 are separated by 172 nucleotides H281DRAFT_02478: H281DRAFT_02478 - formyltetrahydrofolate deformylase (EC 3.5.1.10), at 49,934 to 50,809 _02478 H281DRAFT_02479: H281DRAFT_02479 - transcriptional regulator, LysR family, at 50,935 to 51,849 _02479 H281DRAFT_02480: H281DRAFT_02480 - choline-sulfatase, at 52,022 to 53,560 _02480 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2at 49.936 kb on - strandat 49.936 kb on - strandat 49.967 kb on - strandat 50.520 kb on - strand, within H281DRAFT_02478at 50.703 kb on + strand, within H281DRAFT_02478at 50.703 kb on + strand, within H281DRAFT_02478at 50.704 kb on - strand, within H281DRAFT_02478at 50.704 kb on - strand, within H281DRAFT_02478at 50.932 kb on + strandat 50.932 kb on + strandat 50.932 kb on + strandat 50.936 kb on + strandat 50.936 kb on + strandat 50.986 kb on + strandat 51.024 kb on - strandat 51.524 kb on + strand, within H281DRAFT_02479at 51.525 kb on - strandat 51.734 kb on - strand, within H281DRAFT_02479at 51.862 kb on + strandat 51.862 kb on + strandat 51.863 kb on - strandat 51.978 kb on - strandat 51.981 kb on + strandat 52.005 kb on + strandat 52.005 kb on + strandat 52.042 kb on + strandat 52.091 kb on + strandat 52.449 kb on - strand, within H281DRAFT_02480at 52.821 kb on - strand, within H281DRAFT_02480

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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49,936 - -0.1
49,936 - +0.1
49,967 - +1.9
50,520 - H281DRAFT_02478 0.67 -0.4
50,703 + H281DRAFT_02478 0.88 +0.3
50,703 + H281DRAFT_02478 0.88 -0.9
50,704 - H281DRAFT_02478 0.88 +0.2
50,704 - H281DRAFT_02478 0.88 -0.1
50,932 + -1.4
50,932 + +0.6
50,932 + +0.5
50,936 + +0.3
50,936 + -0.6
50,986 + -0.2
51,024 - -1.7
51,524 + H281DRAFT_02479 0.64 +0.1
51,525 - -0.9
51,734 - H281DRAFT_02479 0.87 +1.7
51,862 + -0.4
51,862 + +0.4
51,863 - -0.1
51,978 - +0.2
51,981 + +0.5
52,005 + -0.1
52,005 + -0.3
52,042 + -0.7
52,091 + +0.2
52,449 - H281DRAFT_02480 0.28 -0.1
52,821 - H281DRAFT_02480 0.52 -0.7

Or see this region's nucleotide sequence