Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02154

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02153 and H281DRAFT_02154 are separated by 614 nucleotidesH281DRAFT_02154 and H281DRAFT_02155 overlap by 4 nucleotidesH281DRAFT_02155 and H281DRAFT_02156 are separated by 90 nucleotides H281DRAFT_02153: H281DRAFT_02153 - rare lipoprotein A, at 292,848 to 293,483 _02153 H281DRAFT_02154: H281DRAFT_02154 - Glyoxylase, beta-lactamase superfamily II, at 294,098 to 294,742 _02154 H281DRAFT_02155: H281DRAFT_02155 - hypothetical protein, at 294,739 to 295,368 _02155 H281DRAFT_02156: H281DRAFT_02156 - transcriptional regulator, AsnC family, at 295,459 to 295,917 _02156 Position (kb) 294 295Strain fitness (log2 ratio) -2 -1 0 1at 293.131 kb on + strand, within H281DRAFT_02153at 293.131 kb on + strand, within H281DRAFT_02153at 293.131 kb on + strand, within H281DRAFT_02153at 293.132 kb on - strand, within H281DRAFT_02153at 293.299 kb on + strand, within H281DRAFT_02153at 293.453 kb on + strandat 293.490 kb on + strandat 293.490 kb on + strandat 293.490 kb on - strandat 293.491 kb on - strandat 293.491 kb on - strandat 293.717 kb on + strandat 293.718 kb on - strandat 293.742 kb on + strandat 293.743 kb on - strandat 293.743 kb on - strandat 293.751 kb on + strandat 293.751 kb on + strandat 293.751 kb on + strandat 293.751 kb on + strandat 293.751 kb on + strandat 293.751 kb on + strandat 293.752 kb on - strandat 293.752 kb on - strandat 293.752 kb on - strandat 293.835 kb on + strandat 293.836 kb on - strandat 293.859 kb on + strandat 293.859 kb on + strandat 293.860 kb on - strandat 293.860 kb on - strandat 293.860 kb on - strandat 293.860 kb on - strandat 293.860 kb on - strandat 293.918 kb on + strandat 293.918 kb on + strandat 293.918 kb on + strandat 293.918 kb on + strandat 293.918 kb on + strandat 293.919 kb on - strandat 293.919 kb on - strandat 293.920 kb on + strandat 293.920 kb on + strandat 293.921 kb on - strandat 293.945 kb on + strandat 293.946 kb on - strandat 294.312 kb on - strand, within H281DRAFT_02154at 294.436 kb on + strand, within H281DRAFT_02154at 294.436 kb on + strand, within H281DRAFT_02154at 294.437 kb on - strand, within H281DRAFT_02154at 294.476 kb on + strand, within H281DRAFT_02154at 294.476 kb on + strand, within H281DRAFT_02154at 294.476 kb on + strand, within H281DRAFT_02154at 294.476 kb on + strand, within H281DRAFT_02154at 294.477 kb on - strand, within H281DRAFT_02154at 294.477 kb on - strand, within H281DRAFT_02154at 294.477 kb on - strand, within H281DRAFT_02154at 294.494 kb on - strand, within H281DRAFT_02154at 294.494 kb on - strand, within H281DRAFT_02154at 294.494 kb on - strand, within H281DRAFT_02154at 294.494 kb on - strand, within H281DRAFT_02154at 294.706 kb on + strandat 294.707 kb on - strandat 294.707 kb on - strandat 294.707 kb on - strandat 294.716 kb on + strandat 294.716 kb on + strandat 294.716 kb on + strandat 294.717 kb on - strandat 294.754 kb on + strandat 294.754 kb on + strandat 294.755 kb on - strandat 294.755 kb on - strandat 294.755 kb on - strandat 294.755 kb on - strandat 294.755 kb on - strandat 294.829 kb on + strand, within H281DRAFT_02155at 294.830 kb on - strand, within H281DRAFT_02155at 294.831 kb on + strand, within H281DRAFT_02155at 294.991 kb on + strand, within H281DRAFT_02155at 294.992 kb on - strand, within H281DRAFT_02155at 294.992 kb on - strand, within H281DRAFT_02155at 295.063 kb on + strand, within H281DRAFT_02155at 295.063 kb on + strand, within H281DRAFT_02155at 295.063 kb on + strand, within H281DRAFT_02155at 295.063 kb on + strand, within H281DRAFT_02155at 295.063 kb on + strand, within H281DRAFT_02155at 295.063 kb on + strand, within H281DRAFT_02155at 295.063 kb on + strand, within H281DRAFT_02155at 295.064 kb on - strand, within H281DRAFT_02155at 295.064 kb on - strand, within H281DRAFT_02155at 295.064 kb on - strand, within H281DRAFT_02155at 295.064 kb on - strand, within H281DRAFT_02155at 295.064 kb on - strand, within H281DRAFT_02155at 295.064 kb on - strand, within H281DRAFT_02155at 295.075 kb on + strand, within H281DRAFT_02155at 295.076 kb on - strand, within H281DRAFT_02155at 295.076 kb on - strand, within H281DRAFT_02155at 295.076 kb on - strand, within H281DRAFT_02155at 295.218 kb on + strand, within H281DRAFT_02155at 295.218 kb on + strand, within H281DRAFT_02155at 295.219 kb on - strand, within H281DRAFT_02155at 295.219 kb on - strand, within H281DRAFT_02155at 295.319 kb on + strandat 295.366 kb on + strandat 295.366 kb on + strandat 295.421 kb on + strandat 295.434 kb on + strandat 295.470 kb on + strandat 295.471 kb on - strandat 295.505 kb on + strand, within H281DRAFT_02156at 295.505 kb on + strand, within H281DRAFT_02156at 295.506 kb on - strand, within H281DRAFT_02156at 295.612 kb on + strand, within H281DRAFT_02156at 295.612 kb on + strand, within H281DRAFT_02156at 295.612 kb on + strand, within H281DRAFT_02156at 295.613 kb on - strand, within H281DRAFT_02156

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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293,131 + H281DRAFT_02153 0.44 +0.1
293,131 + H281DRAFT_02153 0.44 +0.1
293,131 + H281DRAFT_02153 0.44 -0.5
293,132 - H281DRAFT_02153 0.45 -0.9
293,299 + H281DRAFT_02153 0.71 +0.1
293,453 + -0.4
293,490 + -0.2
293,490 + -0.1
293,490 - -0.9
293,491 - -0.6
293,491 - -1.0
293,717 + +0.4
293,718 - -2.1
293,742 + -0.5
293,743 - +0.0
293,743 - +0.1
293,751 + -1.1
293,751 + +0.0
293,751 + -0.0
293,751 + +0.3
293,751 + -0.0
293,751 + -0.2
293,752 - -0.2
293,752 - -0.1
293,752 - +0.2
293,835 + +0.5
293,836 - -0.4
293,859 + +0.1
293,859 + +0.6
293,860 - -0.1
293,860 - +0.3
293,860 - +0.9
293,860 - +1.0
293,860 - -0.5
293,918 + -0.3
293,918 + +0.4
293,918 + +1.4
293,918 + +0.0
293,918 + +0.2
293,919 - +0.9
293,919 - -0.0
293,920 + +0.0
293,920 + +0.2
293,921 - +0.3
293,945 + +0.8
293,946 - +0.3
294,312 - H281DRAFT_02154 0.33 +0.2
294,436 + H281DRAFT_02154 0.52 -1.1
294,436 + H281DRAFT_02154 0.52 +0.1
294,437 - H281DRAFT_02154 0.53 -0.2
294,476 + H281DRAFT_02154 0.59 -1.6
294,476 + H281DRAFT_02154 0.59 +0.1
294,476 + H281DRAFT_02154 0.59 +0.8
294,476 + H281DRAFT_02154 0.59 -0.3
294,477 - H281DRAFT_02154 0.59 -1.0
294,477 - H281DRAFT_02154 0.59 -0.8
294,477 - H281DRAFT_02154 0.59 -0.1
294,494 - H281DRAFT_02154 0.61 +0.3
294,494 - H281DRAFT_02154 0.61 -0.6
294,494 - H281DRAFT_02154 0.61 +0.2
294,494 - H281DRAFT_02154 0.61 -0.7
294,706 + +0.5
294,707 - -0.3
294,707 - -0.0
294,707 - +0.4
294,716 + -0.1
294,716 + +0.3
294,716 + -0.1
294,717 - +0.1
294,754 + -0.1
294,754 + +0.3
294,755 - +0.9
294,755 - +0.1
294,755 - -0.5
294,755 - +0.2
294,755 - +0.0
294,829 + H281DRAFT_02155 0.14 +0.5
294,830 - H281DRAFT_02155 0.14 +0.4
294,831 + H281DRAFT_02155 0.15 +0.3
294,991 + H281DRAFT_02155 0.40 -0.0
294,992 - H281DRAFT_02155 0.40 -0.2
294,992 - H281DRAFT_02155 0.40 -0.1
295,063 + H281DRAFT_02155 0.51 +0.6
295,063 + H281DRAFT_02155 0.51 +0.5
295,063 + H281DRAFT_02155 0.51 +0.0
295,063 + H281DRAFT_02155 0.51 +0.1
295,063 + H281DRAFT_02155 0.51 +0.3
295,063 + H281DRAFT_02155 0.51 -0.7
295,063 + H281DRAFT_02155 0.51 +0.1
295,064 - H281DRAFT_02155 0.52 +1.1
295,064 - H281DRAFT_02155 0.52 +0.5
295,064 - H281DRAFT_02155 0.52 -0.2
295,064 - H281DRAFT_02155 0.52 +0.3
295,064 - H281DRAFT_02155 0.52 -0.2
295,064 - H281DRAFT_02155 0.52 +0.5
295,075 + H281DRAFT_02155 0.53 +1.1
295,076 - H281DRAFT_02155 0.53 -0.4
295,076 - H281DRAFT_02155 0.53 +1.1
295,076 - H281DRAFT_02155 0.53 +0.0
295,218 + H281DRAFT_02155 0.76 +1.1
295,218 + H281DRAFT_02155 0.76 -0.9
295,219 - H281DRAFT_02155 0.76 -0.1
295,219 - H281DRAFT_02155 0.76 +0.1
295,319 + +0.6
295,366 + +0.4
295,366 + -0.1
295,421 + -0.7
295,434 + +0.7
295,470 + +0.5
295,471 - -0.6
295,505 + H281DRAFT_02156 0.10 -0.3
295,505 + H281DRAFT_02156 0.10 -0.1
295,506 - H281DRAFT_02156 0.10 -0.6
295,612 + H281DRAFT_02156 0.33 -1.1
295,612 + H281DRAFT_02156 0.33 -0.1
295,612 + H281DRAFT_02156 0.33 -0.8
295,613 - H281DRAFT_02156 0.34 +0.0

Or see this region's nucleotide sequence