Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01760

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01759 and H281DRAFT_01760 are separated by 347 nucleotidesH281DRAFT_01760 and H281DRAFT_01761 are separated by 89 nucleotides H281DRAFT_01759: H281DRAFT_01759 - rsbT co-antagonist protein RsbR, at 654,583 to 655,452 _01759 H281DRAFT_01760: H281DRAFT_01760 - conserved domain-containing protein, at 655,800 to 656,276 _01760 H281DRAFT_01761: H281DRAFT_01761 - conserved domain-containing protein, at 656,366 to 657,238 _01761 Position (kb) 655 656 657Strain fitness (log2 ratio) -1 0 1at 654.972 kb on + strand, within H281DRAFT_01759at 655.032 kb on - strand, within H281DRAFT_01759at 655.335 kb on + strand, within H281DRAFT_01759at 655.335 kb on + strand, within H281DRAFT_01759at 655.336 kb on - strand, within H281DRAFT_01759at 655.466 kb on - strandat 655.495 kb on + strandat 655.496 kb on - strandat 655.537 kb on - strandat 655.537 kb on - strandat 655.537 kb on - strandat 655.537 kb on - strandat 655.581 kb on - strandat 655.581 kb on - strandat 655.716 kb on + strandat 655.717 kb on - strandat 656.388 kb on + strandat 656.786 kb on + strand, within H281DRAFT_01761at 656.982 kb on + strand, within H281DRAFT_01761at 656.982 kb on + strand, within H281DRAFT_01761at 657.086 kb on - strand, within H281DRAFT_01761at 657.237 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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654,972 + H281DRAFT_01759 0.45 -0.1
655,032 - H281DRAFT_01759 0.52 -0.4
655,335 + H281DRAFT_01759 0.86 -0.2
655,335 + H281DRAFT_01759 0.86 -0.0
655,336 - H281DRAFT_01759 0.87 -0.1
655,466 - +1.0
655,495 + -0.4
655,496 - +0.7
655,537 - +0.7
655,537 - -0.3
655,537 - +0.6
655,537 - +0.7
655,581 - +0.4
655,581 - -0.2
655,716 + +0.3
655,717 - +0.2
656,388 + +0.2
656,786 + H281DRAFT_01761 0.48 -0.4
656,982 + H281DRAFT_01761 0.71 -0.6
656,982 + H281DRAFT_01761 0.71 -0.5
657,086 - H281DRAFT_01761 0.82 +0.7
657,237 - -0.3

Or see this region's nucleotide sequence