Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00896

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00895 and H281DRAFT_00896 are separated by 157 nucleotidesH281DRAFT_00896 and H281DRAFT_00897 are separated by 179 nucleotides H281DRAFT_00895: H281DRAFT_00895 - trigger factor, at 991,500 to 992,846 _00895 H281DRAFT_00896: H281DRAFT_00896 - ATP-dependent Clp protease proteolytic subunit ClpP, at 993,004 to 993,657 _00896 H281DRAFT_00897: H281DRAFT_00897 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 993,837 to 995,108 _00897 Position (kb) 993 994Strain fitness (log2 ratio) -1 0 1at 992.059 kb on + strand, within H281DRAFT_00895at 992.139 kb on - strand, within H281DRAFT_00895at 992.552 kb on + strand, within H281DRAFT_00895at 992.673 kb on + strand, within H281DRAFT_00895at 992.703 kb on + strand, within H281DRAFT_00895at 992.706 kb on + strand, within H281DRAFT_00895at 992.742 kb on + strandat 992.844 kb on + strandat 992.936 kb on + strandat 992.961 kb on + strandat 993.133 kb on + strand, within H281DRAFT_00896at 993.253 kb on + strand, within H281DRAFT_00896at 993.253 kb on + strand, within H281DRAFT_00896at 993.713 kb on + strandat 993.713 kb on + strandat 993.717 kb on + strandat 993.717 kb on + strandat 993.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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992,059 + H281DRAFT_00895 0.41 -1.4
992,139 - H281DRAFT_00895 0.47 -1.1
992,552 + H281DRAFT_00895 0.78 -0.4
992,673 + H281DRAFT_00895 0.87 -1.4
992,703 + H281DRAFT_00895 0.89 -0.5
992,706 + H281DRAFT_00895 0.90 +1.1
992,742 + -0.8
992,844 + +0.1
992,936 + -1.0
992,961 + +0.3
993,133 + H281DRAFT_00896 0.20 +0.8
993,253 + H281DRAFT_00896 0.38 +0.5
993,253 + H281DRAFT_00896 0.38 +0.5
993,713 + -0.5
993,713 + +1.0
993,717 + +0.1
993,717 + +0.2
993,808 + +0.2

Or see this region's nucleotide sequence