Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3247 and HP15_3248 are separated by 102 nucleotides HP15_3248 and HP15_3249 overlap by 4 nucleotides HP15_3249 and HP15_3250 are separated by 224 nucleotides
HP15_3247: HP15_3247 - twin-arginine translocation pathway signal, at 3,400,653 to 3,401,729
_3247
HP15_3248: HP15_3248 - tripartite ATP-independent periplasmic transporter, DctQ component, at 3,401,832 to 3,402,377
_3248
HP15_3249: HP15_3249 - TRAP-type mannitol/chloroaromatic compound transport system, large permease component, at 3,402,374 to 3,403,669
_3249
HP15_3250: HP15_3250 - cyclopropane-fatty-acyl-phospholipid synthase, at 3,403,894 to 3,405,207
_3250
Position (kb)
3402
3403
3404 Strain fitness (log2 ratio)
-1
0
1
2 at 3401.510 kb on + strand, within HP15_3247 at 3401.518 kb on - strand, within HP15_3247 at 3401.605 kb on - strand, within HP15_3247 at 3401.656 kb on + strand at 3401.702 kb on + strand at 3401.722 kb on - strand at 3401.745 kb on - strand at 3401.783 kb on - strand at 3401.882 kb on - strand at 3402.107 kb on + strand, within HP15_3248 at 3402.214 kb on - strand, within HP15_3248 at 3402.268 kb on + strand, within HP15_3248 at 3402.313 kb on - strand, within HP15_3248 at 3402.340 kb on - strand at 3402.341 kb on + strand at 3402.341 kb on + strand at 3402.349 kb on - strand at 3402.442 kb on - strand at 3402.668 kb on + strand, within HP15_3249 at 3402.678 kb on + strand, within HP15_3249 at 3402.702 kb on + strand, within HP15_3249 at 3402.907 kb on - strand, within HP15_3249 at 3402.917 kb on - strand, within HP15_3249 at 3403.033 kb on + strand, within HP15_3249 at 3403.070 kb on + strand, within HP15_3249 at 3403.118 kb on + strand, within HP15_3249 at 3403.231 kb on - strand, within HP15_3249 at 3403.240 kb on - strand, within HP15_3249 at 3403.242 kb on + strand, within HP15_3249 at 3403.265 kb on - strand, within HP15_3249 at 3403.275 kb on - strand, within HP15_3249 at 3403.348 kb on - strand, within HP15_3249 at 3403.476 kb on + strand, within HP15_3249 at 3403.476 kb on - strand, within HP15_3249 at 3403.484 kb on - strand, within HP15_3249 at 3403.673 kb on + strand at 3403.686 kb on + strand at 3403.857 kb on + strand at 3403.873 kb on + strand at 3403.873 kb on + strand at 3403.909 kb on + strand at 3403.951 kb on + strand at 3403.998 kb on + strand at 3404.130 kb on + strand, within HP15_3250 at 3404.181 kb on + strand, within HP15_3250 at 3404.189 kb on - strand, within HP15_3250 at 3404.205 kb on + strand, within HP15_3250 at 3404.245 kb on - strand, within HP15_3250 at 3404.283 kb on + strand, within HP15_3250 at 3404.348 kb on - strand, within HP15_3250 at 3404.357 kb on + strand, within HP15_3250 at 3404.415 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.447 kb on + strand, within HP15_3250 at 3404.455 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.506 kb on - strand, within HP15_3250 at 3404.632 kb on - strand, within HP15_3250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 3,401,510 + HP15_3247 0.80 +0.8 3,401,518 - HP15_3247 0.80 -0.6 3,401,605 - HP15_3247 0.88 +0.7 3,401,656 + +1.2 3,401,702 + +0.5 3,401,722 - +0.5 3,401,745 - +0.6 3,401,783 - +1.4 3,401,882 - +1.0 3,402,107 + HP15_3248 0.50 +1.1 3,402,214 - HP15_3248 0.70 +1.2 3,402,268 + HP15_3248 0.80 +0.4 3,402,313 - HP15_3248 0.88 +0.9 3,402,340 - +2.1 3,402,341 + +0.8 3,402,341 + +0.6 3,402,349 - +0.3 3,402,442 - +1.6 3,402,668 + HP15_3249 0.23 +1.6 3,402,678 + HP15_3249 0.23 +1.1 3,402,702 + HP15_3249 0.25 +0.7 3,402,907 - HP15_3249 0.41 +0.9 3,402,917 - HP15_3249 0.42 +0.7 3,403,033 + HP15_3249 0.51 +0.3 3,403,070 + HP15_3249 0.54 +0.2 3,403,118 + HP15_3249 0.57 +1.7 3,403,231 - HP15_3249 0.66 +0.7 3,403,240 - HP15_3249 0.67 +1.6 3,403,242 + HP15_3249 0.67 +0.8 3,403,265 - HP15_3249 0.69 +0.9 3,403,275 - HP15_3249 0.70 +1.1 3,403,348 - HP15_3249 0.75 +1.5 3,403,476 + HP15_3249 0.85 +1.0 3,403,476 - HP15_3249 0.85 +0.5 3,403,484 - HP15_3249 0.86 +1.7 3,403,673 + +1.0 3,403,686 + +1.0 3,403,857 + +1.5 3,403,873 + -0.3 3,403,873 + +0.6 3,403,909 + +0.1 3,403,951 + -0.3 3,403,998 + +0.9 3,404,130 + HP15_3250 0.18 +0.9 3,404,181 + HP15_3250 0.22 +1.0 3,404,189 - HP15_3250 0.22 -0.1 3,404,205 + HP15_3250 0.24 +0.7 3,404,245 - HP15_3250 0.27 +0.0 3,404,283 + HP15_3250 0.30 -0.0 3,404,348 - HP15_3250 0.35 +1.0 3,404,357 + HP15_3250 0.35 +0.1 3,404,415 + HP15_3250 0.40 -0.9 3,404,447 + HP15_3250 0.42 +0.1 3,404,447 + HP15_3250 0.42 +0.4 3,404,447 + HP15_3250 0.42 +0.1 3,404,455 - HP15_3250 0.43 -0.4 3,404,506 - HP15_3250 0.47 -1.0 3,404,506 - HP15_3250 0.47 -0.1 3,404,632 - HP15_3250 0.56 +1.0
Or see this region's nucleotide sequence