Strain Fitness in Marinobacter adhaerens HP15 around HP15_2662

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2661 and HP15_2662 are separated by 238 nucleotidesHP15_2662 and HP15_2663 overlap by 4 nucleotidesHP15_2663 and HP15_2664 are separated by 18 nucleotides HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data), at 2,810,713 to 2,811,699 _2661 HP15_2662: HP15_2662 - two-component sensor histidine kinase, at 2,811,938 to 2,813,557 _2662 HP15_2663: HP15_2663 - response regulator receiver and unknown domain protein, at 2,813,554 to 2,814,249 _2663 HP15_2664: HP15_2664 - peptidase M48, Ste24p, at 2,814,268 to 2,815,059 _2664 Position (kb) 2811 2812 2813 2814Strain fitness (log2 ratio) -1 0 1 2at 2811.042 kb on + strand, within HP15_2661at 2811.253 kb on + strand, within HP15_2661at 2811.431 kb on + strand, within HP15_2661at 2811.525 kb on + strand, within HP15_2661at 2811.692 kb on + strandat 2811.898 kb on - strandat 2811.991 kb on - strandat 2812.231 kb on - strand, within HP15_2662at 2812.294 kb on + strand, within HP15_2662at 2812.416 kb on + strand, within HP15_2662at 2812.424 kb on - strand, within HP15_2662at 2812.430 kb on - strand, within HP15_2662at 2812.438 kb on + strand, within HP15_2662at 2812.471 kb on - strand, within HP15_2662at 2812.476 kb on + strand, within HP15_2662at 2812.505 kb on - strand, within HP15_2662at 2812.817 kb on + strand, within HP15_2662at 2813.244 kb on + strand, within HP15_2662at 2813.294 kb on - strand, within HP15_2662at 2813.400 kb on + strandat 2813.401 kb on - strandat 2813.424 kb on + strandat 2813.432 kb on - strandat 2813.458 kb on + strandat 2813.458 kb on + strandat 2813.458 kb on + strandat 2813.466 kb on - strandat 2813.480 kb on + strandat 2813.521 kb on - strandat 2813.521 kb on - strandat 2813.521 kb on - strandat 2813.521 kb on - strandat 2813.521 kb on - strandat 2813.521 kb on - strandat 2813.772 kb on - strand, within HP15_2663at 2813.818 kb on + strand, within HP15_2663at 2813.818 kb on + strand, within HP15_2663at 2813.832 kb on - strand, within HP15_2663at 2813.912 kb on + strand, within HP15_2663at 2813.912 kb on + strand, within HP15_2663at 2813.920 kb on - strand, within HP15_2663at 2813.979 kb on + strand, within HP15_2663at 2814.264 kb on - strandat 2814.367 kb on + strand, within HP15_2664at 2814.382 kb on + strand, within HP15_2664at 2814.392 kb on + strand, within HP15_2664at 2814.446 kb on + strand, within HP15_2664at 2814.446 kb on + strand, within HP15_2664at 2814.446 kb on + strand, within HP15_2664at 2814.446 kb on + strand, within HP15_2664at 2814.454 kb on - strand, within HP15_2664at 2814.456 kb on + strand, within HP15_2664at 2814.464 kb on - strand, within HP15_2664at 2814.468 kb on + strand, within HP15_2664at 2814.469 kb on + strand, within HP15_2664at 2814.477 kb on - strand, within HP15_2664at 2814.484 kb on + strand, within HP15_2664at 2814.553 kb on + strand, within HP15_2664

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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2,811,042 + HP15_2661 0.33 -0.2
2,811,253 + HP15_2661 0.55 +0.1
2,811,431 + HP15_2661 0.73 -0.5
2,811,525 + HP15_2661 0.82 -0.2
2,811,692 + -0.0
2,811,898 - +1.0
2,811,991 - +0.1
2,812,231 - HP15_2662 0.18 +2.5
2,812,294 + HP15_2662 0.22 +1.8
2,812,416 + HP15_2662 0.30 +0.6
2,812,424 - HP15_2662 0.30 +1.2
2,812,430 - HP15_2662 0.30 +0.3
2,812,438 + HP15_2662 0.31 +0.4
2,812,471 - HP15_2662 0.33 +0.4
2,812,476 + HP15_2662 0.33 +0.5
2,812,505 - HP15_2662 0.35 +0.4
2,812,817 + HP15_2662 0.54 +1.1
2,813,244 + HP15_2662 0.81 +1.1
2,813,294 - HP15_2662 0.84 +2.0
2,813,400 + +1.7
2,813,401 - +1.1
2,813,424 + +1.2
2,813,432 - +0.9
2,813,458 + +1.8
2,813,458 + +0.1
2,813,458 + -0.0
2,813,466 - +0.5
2,813,480 + +1.0
2,813,521 - +0.7
2,813,521 - +2.1
2,813,521 - +0.3
2,813,521 - +1.7
2,813,521 - +1.3
2,813,521 - +0.5
2,813,772 - HP15_2663 0.31 +1.1
2,813,818 + HP15_2663 0.38 +1.3
2,813,818 + HP15_2663 0.38 +2.5
2,813,832 - HP15_2663 0.40 +1.8
2,813,912 + HP15_2663 0.51 +1.5
2,813,912 + HP15_2663 0.51 +1.8
2,813,920 - HP15_2663 0.53 +1.9
2,813,979 + HP15_2663 0.61 +2.1
2,814,264 - -0.8
2,814,367 + HP15_2664 0.12 +0.8
2,814,382 + HP15_2664 0.14 -1.0
2,814,392 + HP15_2664 0.16 -0.1
2,814,446 + HP15_2664 0.22 +0.5
2,814,446 + HP15_2664 0.22 -0.5
2,814,446 + HP15_2664 0.22 -0.1
2,814,446 + HP15_2664 0.22 +0.1
2,814,454 - HP15_2664 0.23 +1.3
2,814,456 + HP15_2664 0.24 +1.1
2,814,464 - HP15_2664 0.25 -0.1
2,814,468 + HP15_2664 0.25 +0.7
2,814,469 + HP15_2664 0.25 +0.2
2,814,477 - HP15_2664 0.26 -0.5
2,814,484 + HP15_2664 0.27 -0.1
2,814,553 + HP15_2664 0.36 -0.4

Or see this region's nucleotide sequence