Experiment: m.b. perchlorate 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2121 and HP15_2122 overlap by 4 nucleotides HP15_2122 and HP15_2123 are separated by 53 nucleotides
HP15_2121: HP15_2121 - long-chain fatty acid transport protein, at 2,219,907 to 2,221,574
_2121
HP15_2122: HP15_2122 - conserved hypothetical protein, secreted, at 2,221,571 to 2,222,581
_2122
HP15_2123: HP15_2123 - peptidase C39, bacteriocin processing, at 2,222,635 to 2,223,435
_2123
Position (kb)
2221
2222
2223 Strain fitness (log2 ratio)
-1
0
1 at 2220.645 kb on - strand, within HP15_2121 at 2220.697 kb on - strand, within HP15_2121 at 2220.697 kb on - strand, within HP15_2121 at 2220.854 kb on + strand, within HP15_2121 at 2220.902 kb on + strand, within HP15_2121 at 2220.968 kb on - strand, within HP15_2121 at 2220.968 kb on - strand, within HP15_2121 at 2221.093 kb on + strand, within HP15_2121 at 2221.113 kb on + strand, within HP15_2121 at 2221.125 kb on + strand, within HP15_2121 at 2221.276 kb on + strand, within HP15_2121 at 2221.321 kb on + strand, within HP15_2121 at 2221.473 kb on + strand at 2221.476 kb on - strand at 2221.726 kb on - strand, within HP15_2122 at 2221.881 kb on - strand, within HP15_2122 at 2221.930 kb on - strand, within HP15_2122 at 2222.084 kb on - strand, within HP15_2122 at 2222.326 kb on + strand, within HP15_2122 at 2222.334 kb on - strand, within HP15_2122 at 2222.346 kb on + strand, within HP15_2122 at 2222.608 kb on + strand at 2222.615 kb on + strand at 2222.641 kb on - strand at 2222.676 kb on - strand at 2222.738 kb on - strand, within HP15_2123 at 2222.738 kb on - strand, within HP15_2123 at 2222.810 kb on - strand, within HP15_2123 at 2223.065 kb on + strand, within HP15_2123 at 2223.168 kb on - strand, within HP15_2123 at 2223.214 kb on + strand, within HP15_2123 at 2223.222 kb on - strand, within HP15_2123 at 2223.357 kb on - strand at 2223.560 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM remove 2,220,645 - HP15_2121 0.44 +0.5 2,220,697 - HP15_2121 0.47 +0.5 2,220,697 - HP15_2121 0.47 -0.0 2,220,854 + HP15_2121 0.57 +0.8 2,220,902 + HP15_2121 0.60 -0.0 2,220,968 - HP15_2121 0.64 -0.1 2,220,968 - HP15_2121 0.64 -0.2 2,221,093 + HP15_2121 0.71 -0.8 2,221,113 + HP15_2121 0.72 +0.7 2,221,125 + HP15_2121 0.73 +1.1 2,221,276 + HP15_2121 0.82 -0.2 2,221,321 + HP15_2121 0.85 -0.3 2,221,473 + +0.4 2,221,476 - +0.1 2,221,726 - HP15_2122 0.15 +0.2 2,221,881 - HP15_2122 0.31 -0.8 2,221,930 - HP15_2122 0.36 -0.7 2,222,084 - HP15_2122 0.51 +0.4 2,222,326 + HP15_2122 0.75 -0.7 2,222,334 - HP15_2122 0.75 -1.3 2,222,346 + HP15_2122 0.77 -1.1 2,222,608 + +1.0 2,222,615 + +0.9 2,222,641 - -0.1 2,222,676 - +0.5 2,222,738 - HP15_2123 0.13 +0.9 2,222,738 - HP15_2123 0.13 +0.3 2,222,810 - HP15_2123 0.22 +0.7 2,223,065 + HP15_2123 0.54 -0.2 2,223,168 - HP15_2123 0.67 +1.4 2,223,214 + HP15_2123 0.72 -0.6 2,223,222 - HP15_2123 0.73 -0.2 2,223,357 - +0.7 2,223,560 + +0.1
Or see this region's nucleotide sequence