Strain Fitness in Marinobacter adhaerens HP15 around HP15_2122

Experiment: m.b. perchlorate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2121 and HP15_2122 overlap by 4 nucleotidesHP15_2122 and HP15_2123 are separated by 53 nucleotides HP15_2121: HP15_2121 - long-chain fatty acid transport protein, at 2,219,907 to 2,221,574 _2121 HP15_2122: HP15_2122 - conserved hypothetical protein, secreted, at 2,221,571 to 2,222,581 _2122 HP15_2123: HP15_2123 - peptidase C39, bacteriocin processing, at 2,222,635 to 2,223,435 _2123 Position (kb) 2221 2222 2223Strain fitness (log2 ratio) -1 0 1at 2220.645 kb on - strand, within HP15_2121at 2220.697 kb on - strand, within HP15_2121at 2220.697 kb on - strand, within HP15_2121at 2220.854 kb on + strand, within HP15_2121at 2220.902 kb on + strand, within HP15_2121at 2220.968 kb on - strand, within HP15_2121at 2220.968 kb on - strand, within HP15_2121at 2221.093 kb on + strand, within HP15_2121at 2221.113 kb on + strand, within HP15_2121at 2221.125 kb on + strand, within HP15_2121at 2221.276 kb on + strand, within HP15_2121at 2221.321 kb on + strand, within HP15_2121at 2221.473 kb on + strandat 2221.476 kb on - strandat 2221.726 kb on - strand, within HP15_2122at 2221.881 kb on - strand, within HP15_2122at 2221.930 kb on - strand, within HP15_2122at 2222.084 kb on - strand, within HP15_2122at 2222.326 kb on + strand, within HP15_2122at 2222.334 kb on - strand, within HP15_2122at 2222.346 kb on + strand, within HP15_2122at 2222.608 kb on + strandat 2222.615 kb on + strandat 2222.641 kb on - strandat 2222.676 kb on - strandat 2222.738 kb on - strand, within HP15_2123at 2222.738 kb on - strand, within HP15_2123at 2222.810 kb on - strand, within HP15_2123at 2223.065 kb on + strand, within HP15_2123at 2223.168 kb on - strand, within HP15_2123at 2223.214 kb on + strand, within HP15_2123at 2223.222 kb on - strand, within HP15_2123at 2223.357 kb on - strandat 2223.560 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
remove
2,220,645 - HP15_2121 0.44 +0.5
2,220,697 - HP15_2121 0.47 +0.5
2,220,697 - HP15_2121 0.47 -0.0
2,220,854 + HP15_2121 0.57 +0.8
2,220,902 + HP15_2121 0.60 -0.0
2,220,968 - HP15_2121 0.64 -0.1
2,220,968 - HP15_2121 0.64 -0.2
2,221,093 + HP15_2121 0.71 -0.8
2,221,113 + HP15_2121 0.72 +0.7
2,221,125 + HP15_2121 0.73 +1.1
2,221,276 + HP15_2121 0.82 -0.2
2,221,321 + HP15_2121 0.85 -0.3
2,221,473 + +0.4
2,221,476 - +0.1
2,221,726 - HP15_2122 0.15 +0.2
2,221,881 - HP15_2122 0.31 -0.8
2,221,930 - HP15_2122 0.36 -0.7
2,222,084 - HP15_2122 0.51 +0.4
2,222,326 + HP15_2122 0.75 -0.7
2,222,334 - HP15_2122 0.75 -1.3
2,222,346 + HP15_2122 0.77 -1.1
2,222,608 + +1.0
2,222,615 + +0.9
2,222,641 - -0.1
2,222,676 - +0.5
2,222,738 - HP15_2123 0.13 +0.9
2,222,738 - HP15_2123 0.13 +0.3
2,222,810 - HP15_2123 0.22 +0.7
2,223,065 + HP15_2123 0.54 -0.2
2,223,168 - HP15_2123 0.67 +1.4
2,223,214 + HP15_2123 0.72 -0.6
2,223,222 - HP15_2123 0.73 -0.2
2,223,357 - +0.7
2,223,560 + +0.1

Or see this region's nucleotide sequence