Strain Fitness in Marinobacter adhaerens HP15 around HP15_2093

Experiment: m.b. perchlorate 50 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2092 and HP15_2093 are separated by 53 nucleotidesHP15_2093 and HP15_2094 are separated by 9 nucleotidesHP15_2094 and HP15_2095 are separated by 159 nucleotides HP15_2092: HP15_2092 - conserved hypothetical protein, at 2,190,465 to 2,191,232 _2092 HP15_2093: HP15_2093 - signal transduction histidine kinase, at 2,191,286 to 2,193,613 _2093 HP15_2094: HP15_2094 - glutathione peroxidase, at 2,193,623 to 2,194,207 _2094 HP15_2095: HP15_2095 - aspartate aminotransferase, at 2,194,367 to 2,195,581 _2095 Position (kb) 2191 2192 2193 2194Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2190.602 kb on - strand, within HP15_2092at 2190.633 kb on + strand, within HP15_2092at 2190.660 kb on - strand, within HP15_2092at 2190.696 kb on + strand, within HP15_2092at 2190.733 kb on - strand, within HP15_2092at 2190.942 kb on + strand, within HP15_2092at 2191.022 kb on - strand, within HP15_2092at 2191.236 kb on - strandat 2191.314 kb on + strandat 2191.322 kb on - strandat 2191.379 kb on - strandat 2191.596 kb on + strand, within HP15_2093at 2191.599 kb on - strand, within HP15_2093at 2191.619 kb on - strand, within HP15_2093at 2191.671 kb on - strand, within HP15_2093at 2191.787 kb on + strand, within HP15_2093at 2191.788 kb on + strand, within HP15_2093at 2191.808 kb on - strand, within HP15_2093at 2191.897 kb on + strand, within HP15_2093at 2191.937 kb on + strand, within HP15_2093at 2192.048 kb on - strand, within HP15_2093at 2192.119 kb on + strand, within HP15_2093at 2192.119 kb on + strand, within HP15_2093at 2192.127 kb on - strand, within HP15_2093at 2192.253 kb on + strand, within HP15_2093at 2192.313 kb on - strand, within HP15_2093at 2192.404 kb on - strand, within HP15_2093at 2192.414 kb on + strand, within HP15_2093at 2192.414 kb on - strand, within HP15_2093at 2192.493 kb on - strand, within HP15_2093at 2192.536 kb on - strand, within HP15_2093at 2192.536 kb on - strand, within HP15_2093at 2192.563 kb on - strand, within HP15_2093at 2192.563 kb on - strand, within HP15_2093at 2192.573 kb on - strand, within HP15_2093at 2192.778 kb on + strand, within HP15_2093at 2192.778 kb on + strand, within HP15_2093at 2192.786 kb on - strand, within HP15_2093at 2192.810 kb on + strand, within HP15_2093at 2192.818 kb on - strand, within HP15_2093at 2192.881 kb on + strand, within HP15_2093at 2193.023 kb on + strand, within HP15_2093at 2193.097 kb on - strand, within HP15_2093at 2193.110 kb on - strand, within HP15_2093at 2193.365 kb on - strand, within HP15_2093at 2193.387 kb on - strandat 2193.621 kb on + strandat 2193.722 kb on - strand, within HP15_2094at 2193.755 kb on + strand, within HP15_2094at 2193.866 kb on + strand, within HP15_2094at 2193.879 kb on - strand, within HP15_2094at 2193.934 kb on - strand, within HP15_2094at 2194.058 kb on - strand, within HP15_2094at 2194.156 kb on + strandat 2194.158 kb on + strandat 2194.166 kb on - strandat 2194.435 kb on - strandat 2194.569 kb on + strand, within HP15_2095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
remove
2,190,602 - HP15_2092 0.18 +1.7
2,190,633 + HP15_2092 0.22 -1.7
2,190,660 - HP15_2092 0.25 +0.1
2,190,696 + HP15_2092 0.30 +0.7
2,190,733 - HP15_2092 0.35 -1.0
2,190,942 + HP15_2092 0.62 -2.7
2,191,022 - HP15_2092 0.73 -0.4
2,191,236 - -0.7
2,191,314 + -0.7
2,191,322 - -0.1
2,191,379 - -1.2
2,191,596 + HP15_2093 0.13 -1.3
2,191,599 - HP15_2093 0.13 +0.3
2,191,619 - HP15_2093 0.14 +1.9
2,191,671 - HP15_2093 0.17 -0.7
2,191,787 + HP15_2093 0.22 +0.1
2,191,788 + HP15_2093 0.22 -0.0
2,191,808 - HP15_2093 0.22 -2.5
2,191,897 + HP15_2093 0.26 -0.3
2,191,937 + HP15_2093 0.28 -1.8
2,192,048 - HP15_2093 0.33 -0.8
2,192,119 + HP15_2093 0.36 +0.1
2,192,119 + HP15_2093 0.36 -1.2
2,192,127 - HP15_2093 0.36 -1.0
2,192,253 + HP15_2093 0.42 -0.6
2,192,313 - HP15_2093 0.44 -0.5
2,192,404 - HP15_2093 0.48 -1.0
2,192,414 + HP15_2093 0.48 -0.9
2,192,414 - HP15_2093 0.48 +0.3
2,192,493 - HP15_2093 0.52 -0.4
2,192,536 - HP15_2093 0.54 -0.4
2,192,536 - HP15_2093 0.54 -0.5
2,192,563 - HP15_2093 0.55 -0.5
2,192,563 - HP15_2093 0.55 -0.2
2,192,573 - HP15_2093 0.55 -0.1
2,192,778 + HP15_2093 0.64 -0.5
2,192,778 + HP15_2093 0.64 -2.8
2,192,786 - HP15_2093 0.64 +0.2
2,192,810 + HP15_2093 0.65 -0.5
2,192,818 - HP15_2093 0.66 -0.9
2,192,881 + HP15_2093 0.69 -1.9
2,193,023 + HP15_2093 0.75 +1.3
2,193,097 - HP15_2093 0.78 -0.4
2,193,110 - HP15_2093 0.78 -1.2
2,193,365 - HP15_2093 0.89 -0.6
2,193,387 - -1.7
2,193,621 + -0.5
2,193,722 - HP15_2094 0.17 +0.4
2,193,755 + HP15_2094 0.23 +0.2
2,193,866 + HP15_2094 0.42 +1.0
2,193,879 - HP15_2094 0.44 +0.1
2,193,934 - HP15_2094 0.53 -0.4
2,194,058 - HP15_2094 0.74 -0.8
2,194,156 + +0.9
2,194,158 + -0.4
2,194,166 - +0.7
2,194,435 - -2.0
2,194,569 + HP15_2095 0.17 +1.9

Or see this region's nucleotide sequence