Strain Fitness in Marinobacter adhaerens HP15 around HP15_1016

Experiment: m.b. perchlorate 50 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1014 and HP15_1015 are separated by 27 nucleotidesHP15_1015 and HP15_1016 are separated by 395 nucleotidesHP15_1016 and HP15_1017 overlap by 4 nucleotides HP15_1014: HP15_1014 - nitrate ABC transporter, ATPase subunits C and D, at 1,027,217 to 1,028,125 _1014 HP15_1015: HP15_1015 - cyanate lyase, at 1,028,153 to 1,028,596 _1015 HP15_1016: HP15_1016 - acetolactate synthase II, small subunit-like protein, at 1,028,992 to 1,029,270 _1016 HP15_1017: HP15_1017 - acetolactate synthase, large subunit, biosynthetic type, at 1,029,267 to 1,030,967 _1017 Position (kb) 1028 1029 1030Strain fitness (log2 ratio) -1 0 1at 1028.057 kb on - strandat 1028.134 kb on - strandat 1028.134 kb on - strandat 1028.173 kb on - strandat 1028.198 kb on + strand, within HP15_1015at 1028.214 kb on + strand, within HP15_1015at 1028.215 kb on - strand, within HP15_1015at 1028.303 kb on + strand, within HP15_1015at 1028.328 kb on + strand, within HP15_1015at 1028.375 kb on + strand, within HP15_1015at 1028.547 kb on + strand, within HP15_1015at 1028.547 kb on + strand, within HP15_1015at 1028.572 kb on + strandat 1028.572 kb on + strandat 1028.634 kb on - strandat 1028.761 kb on - strandat 1028.862 kb on - strandat 1028.983 kb on + strandat 1028.986 kb on - strandat 1029.115 kb on + strand, within HP15_1016at 1029.179 kb on + strand, within HP15_1016at 1029.231 kb on + strand, within HP15_1016at 1029.259 kb on - strandat 1029.365 kb on + strandat 1029.435 kb on + strandat 1029.435 kb on + strandat 1029.538 kb on + strand, within HP15_1017at 1029.735 kb on + strand, within HP15_1017at 1029.767 kb on - strand, within HP15_1017at 1029.792 kb on + strand, within HP15_1017at 1029.937 kb on + strand, within HP15_1017at 1029.967 kb on - strand, within HP15_1017at 1029.983 kb on + strand, within HP15_1017at 1030.026 kb on + strand, within HP15_1017at 1030.034 kb on - strand, within HP15_1017at 1030.115 kb on + strand, within HP15_1017at 1030.115 kb on + strand, within HP15_1017at 1030.123 kb on - strand, within HP15_1017at 1030.178 kb on - strand, within HP15_1017at 1030.246 kb on - strand, within HP15_1017

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 50 mM
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1,028,057 - -0.4
1,028,134 - +0.0
1,028,134 - +0.5
1,028,173 - -0.0
1,028,198 + HP15_1015 0.10 -0.4
1,028,214 + HP15_1015 0.14 +1.2
1,028,215 - HP15_1015 0.14 -0.4
1,028,303 + HP15_1015 0.34 +0.8
1,028,328 + HP15_1015 0.39 -0.1
1,028,375 + HP15_1015 0.50 +0.5
1,028,547 + HP15_1015 0.89 +0.0
1,028,547 + HP15_1015 0.89 +0.7
1,028,572 + +0.5
1,028,572 + +0.0
1,028,634 - -1.0
1,028,761 - -0.4
1,028,862 - +0.0
1,028,983 + -0.6
1,028,986 - +0.2
1,029,115 + HP15_1016 0.44 -0.5
1,029,179 + HP15_1016 0.67 -0.9
1,029,231 + HP15_1016 0.86 -0.9
1,029,259 - -0.5
1,029,365 + +1.0
1,029,435 + +0.4
1,029,435 + +0.2
1,029,538 + HP15_1017 0.16 +0.6
1,029,735 + HP15_1017 0.28 +0.1
1,029,767 - HP15_1017 0.29 +0.8
1,029,792 + HP15_1017 0.31 +0.5
1,029,937 + HP15_1017 0.39 -0.4
1,029,967 - HP15_1017 0.41 +0.3
1,029,983 + HP15_1017 0.42 -0.4
1,030,026 + HP15_1017 0.45 -0.2
1,030,034 - HP15_1017 0.45 -0.3
1,030,115 + HP15_1017 0.50 -0.6
1,030,115 + HP15_1017 0.50 -0.2
1,030,123 - HP15_1017 0.50 +0.2
1,030,178 - HP15_1017 0.54 -1.0
1,030,246 - HP15_1017 0.58 +1.0

Or see this region's nucleotide sequence