Strain Fitness in Dechlorosoma suillum PS around Dsui_2973

Experiment: a-Ketoglutaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2971 and Dsui_2972 are separated by 106 nucleotidesDsui_2972 and Dsui_2973 are separated by 5 nucleotidesDsui_2973 and Dsui_2974 are separated by 4 nucleotides Dsui_2971: Dsui_2971 - putative esterase of the alpha-beta hydrolase superfamily, at 3,176,667 to 3,177,560 _2971 Dsui_2972: Dsui_2972 - leucyl/phenylalanyl-tRNA--protein transferase, at 3,177,667 to 3,178,383 _2972 Dsui_2973: Dsui_2973 - putative arginyl-tRNA:protein arginylyltransferase, at 3,178,389 to 3,179,162 _2973 Dsui_2974: Dsui_2974 - putative iron-regulated membrane protein, at 3,179,167 to 3,180,438 _2974 Position (kb) 3178 3179 3180Strain fitness (log2 ratio) -2 -1 0 1at 3177.403 kb on - strand, within Dsui_2971at 3177.432 kb on - strand, within Dsui_2971at 3177.632 kb on - strandat 3177.637 kb on - strandat 3177.643 kb on - strandat 3177.680 kb on - strandat 3177.834 kb on + strand, within Dsui_2972at 3177.834 kb on - strandat 3177.839 kb on + strand, within Dsui_2972at 3177.864 kb on - strand, within Dsui_2972at 3177.922 kb on + strand, within Dsui_2972at 3177.955 kb on - strandat 3178.163 kb on + strand, within Dsui_2972at 3178.233 kb on + strand, within Dsui_2972at 3178.241 kb on + strand, within Dsui_2972at 3178.241 kb on + strand, within Dsui_2972at 3178.441 kb on - strandat 3178.457 kb on - strandat 3178.486 kb on + strand, within Dsui_2973at 3178.726 kb on + strand, within Dsui_2973at 3178.936 kb on + strand, within Dsui_2973at 3178.969 kb on + strand, within Dsui_2973at 3179.151 kb on + strandat 3179.182 kb on + strandat 3179.237 kb on - strandat 3179.406 kb on + strand, within Dsui_2974at 3179.429 kb on - strand, within Dsui_2974at 3179.509 kb on - strand, within Dsui_2974at 3179.509 kb on - strand, within Dsui_2974at 3179.612 kb on - strand, within Dsui_2974at 3179.625 kb on - strand, within Dsui_2974at 3179.637 kb on + strand, within Dsui_2974at 3179.734 kb on + strandat 3179.766 kb on + strand, within Dsui_2974at 3179.856 kb on - strand, within Dsui_2974at 3179.941 kb on + strand, within Dsui_2974at 3179.941 kb on + strand, within Dsui_2974at 3180.019 kb on - strandat 3180.019 kb on - strandat 3180.057 kb on + strand, within Dsui_2974at 3180.057 kb on + strandat 3180.071 kb on - strand, within Dsui_2974

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
remove
3,177,403 - Dsui_2971 0.82 +1.0
3,177,432 - Dsui_2971 0.86 -1.3
3,177,632 - +0.7
3,177,637 - +0.7
3,177,643 - +0.7
3,177,680 - +0.7
3,177,834 + Dsui_2972 0.23 -0.0
3,177,834 - +0.7
3,177,839 + Dsui_2972 0.24 +1.7
3,177,864 - Dsui_2972 0.27 -0.9
3,177,922 + Dsui_2972 0.36 -0.3
3,177,955 - -0.9
3,178,163 + Dsui_2972 0.69 -0.4
3,178,233 + Dsui_2972 0.79 -0.4
3,178,241 + Dsui_2972 0.80 -0.4
3,178,241 + Dsui_2972 0.80 +0.6
3,178,441 - +0.7
3,178,457 - +0.7
3,178,486 + Dsui_2973 0.13 -0.5
3,178,726 + Dsui_2973 0.44 -0.9
3,178,936 + Dsui_2973 0.71 -0.7
3,178,969 + Dsui_2973 0.75 -0.6
3,179,151 + -1.1
3,179,182 + -0.5
3,179,237 - +0.7
3,179,406 + Dsui_2974 0.19 -2.6
3,179,429 - Dsui_2974 0.21 -0.3
3,179,509 - Dsui_2974 0.27 -0.3
3,179,509 - Dsui_2974 0.27 -2.3
3,179,612 - Dsui_2974 0.35 -1.6
3,179,625 - Dsui_2974 0.36 -0.9
3,179,637 + Dsui_2974 0.37 +0.7
3,179,734 + +0.7
3,179,766 + Dsui_2974 0.47 +0.7
3,179,856 - Dsui_2974 0.54 -0.3
3,179,941 + Dsui_2974 0.61 +0.7
3,179,941 + Dsui_2974 0.61 -1.9
3,180,019 - +0.7
3,180,019 - +0.7
3,180,057 + Dsui_2974 0.70 -1.9
3,180,057 + +0.7
3,180,071 - Dsui_2974 0.71 +0.7

Or see this region's nucleotide sequence