Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2900 and Dsui_2901 are separated by 62 nucleotides Dsui_2901 and Dsui_2902 are separated by 224 nucleotides Dsui_2902 and Dsui_2903 are separated by 31 nucleotides
Dsui_2900: Dsui_2900 - glutamate synthase family protein, at 3,103,031 to 3,104,515
_2900
Dsui_2901: Dsui_2901 - nicotinate-nucleotide pyrophosphorylase, at 3,104,578 to 3,105,462
_2901
Dsui_2902: Dsui_2902 - hypothetical protein, at 3,105,687 to 3,105,824
_2902
Dsui_2903: Dsui_2903 - methyltransferase family protein, at 3,105,856 to 3,106,476
_2903
Position (kb)
3104
3105
3106 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3103.961 kb on - strand, within Dsui_2900 at 3103.992 kb on - strand, within Dsui_2900 at 3104.030 kb on + strand at 3104.032 kb on - strand, within Dsui_2900 at 3104.104 kb on - strand, within Dsui_2900 at 3104.105 kb on - strand at 3104.115 kb on - strand, within Dsui_2900 at 3104.116 kb on + strand at 3104.212 kb on + strand at 3104.268 kb on + strand, within Dsui_2900 at 3104.302 kb on + strand at 3104.425 kb on + strand at 3104.433 kb on - strand at 3104.440 kb on - strand at 3104.473 kb on + strand at 3104.585 kb on + strand at 3105.511 kb on - strand at 3105.556 kb on + strand at 3105.598 kb on + strand at 3105.678 kb on + strand at 3105.772 kb on + strand, within Dsui_2902 at 3105.812 kb on + strand at 3105.817 kb on + strand at 3105.887 kb on - strand at 3105.914 kb on + strand at 3105.992 kb on - strand, within Dsui_2903 at 3106.055 kb on - strand, within Dsui_2903 at 3106.163 kb on - strand, within Dsui_2903 at 3106.178 kb on + strand, within Dsui_2903 at 3106.345 kb on + strand, within Dsui_2903 at 3106.345 kb on + strand at 3106.348 kb on - strand, within Dsui_2903 at 3106.407 kb on - strand, within Dsui_2903 at 3106.444 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 3,103,961 - Dsui_2900 0.63 +0.7 3,103,992 - Dsui_2900 0.65 -1.3 3,104,030 + +0.7 3,104,032 - Dsui_2900 0.67 -0.9 3,104,104 - Dsui_2900 0.72 -1.3 3,104,105 - +0.7 3,104,115 - Dsui_2900 0.73 -1.6 3,104,116 + -0.3 3,104,212 + +0.7 3,104,268 + Dsui_2900 0.83 +0.7 3,104,302 + +0.7 3,104,425 + +0.7 3,104,433 - -0.3 3,104,440 - -0.3 3,104,473 + -0.3 3,104,585 + -1.6 3,105,511 - -0.3 3,105,556 + -3.5 3,105,598 + -0.2 3,105,678 + -0.2 3,105,772 + Dsui_2902 0.62 -0.6 3,105,812 + -0.6 3,105,817 + -0.4 3,105,887 - -1.6 3,105,914 + +0.1 3,105,992 - Dsui_2903 0.22 -3.3 3,106,055 - Dsui_2903 0.32 -2.1 3,106,163 - Dsui_2903 0.49 +0.1 3,106,178 + Dsui_2903 0.52 +0.7 3,106,345 + Dsui_2903 0.79 -0.9 3,106,345 + +0.7 3,106,348 - Dsui_2903 0.79 -2.1 3,106,407 - Dsui_2903 0.89 -1.6 3,106,444 - -1.6
Or see this region's nucleotide sequence