Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2336 and Dsui_2337 are separated by 383 nucleotides Dsui_2337 and Dsui_2339 are separated by 254 nucleotides Dsui_2339 and Dsui_2340 are separated by 4 nucleotides
Dsui_2336: Dsui_2336 - hypothetical protein, at 2,489,150 to 2,489,743
_2336
Dsui_2337: Dsui_2337 - putative Fe-S oxidoreductase, at 2,490,127 to 2,490,468
_2337
Dsui_2339: Dsui_2339 - putative domain HDIG-containing protein, at 2,490,723 to 2,491,634
_2339
Dsui_2340: Dsui_2340 - ABC-type multidrug transport system, permease component, at 2,491,639 to 2,492,772
_2340
Position (kb)
2490
2491
2492 Strain fitness (log2 ratio)
-2
-1
0
1 at 2489.805 kb on - strand at 2489.859 kb on + strand at 2489.986 kb on + strand at 2490.040 kb on + strand at 2490.087 kb on + strand at 2490.523 kb on + strand at 2490.523 kb on + strand at 2490.613 kb on + strand at 2490.674 kb on + strand at 2490.692 kb on + strand at 2490.743 kb on - strand at 2490.812 kb on + strand at 2490.812 kb on + strand at 2490.812 kb on + strand at 2490.820 kb on - strand at 2490.820 kb on - strand at 2490.850 kb on + strand, within Dsui_2339 at 2490.990 kb on - strand, within Dsui_2339 at 2491.033 kb on + strand, within Dsui_2339 at 2491.041 kb on + strand at 2491.051 kb on + strand, within Dsui_2339 at 2491.087 kb on - strand at 2491.190 kb on - strand, within Dsui_2339 at 2491.240 kb on - strand at 2491.431 kb on - strand at 2491.539 kb on + strand, within Dsui_2339 at 2491.613 kb on + strand at 2491.675 kb on + strand at 2491.676 kb on - strand at 2491.729 kb on + strand at 2491.764 kb on - strand, within Dsui_2340 at 2491.794 kb on - strand, within Dsui_2340 at 2491.799 kb on - strand, within Dsui_2340 at 2491.801 kb on - strand, within Dsui_2340 at 2491.814 kb on - strand, within Dsui_2340 at 2491.857 kb on + strand, within Dsui_2340 at 2491.903 kb on - strand, within Dsui_2340 at 2491.928 kb on + strand, within Dsui_2340 at 2491.952 kb on + strand, within Dsui_2340 at 2491.965 kb on + strand, within Dsui_2340 at 2491.973 kb on + strand, within Dsui_2340 at 2491.976 kb on - strand, within Dsui_2340 at 2491.981 kb on - strand, within Dsui_2340 at 2492.042 kb on - strand at 2492.042 kb on - strand, within Dsui_2340 at 2492.042 kb on - strand, within Dsui_2340 at 2492.042 kb on - strand, within Dsui_2340 at 2492.189 kb on - strand, within Dsui_2340 at 2492.204 kb on - strand, within Dsui_2340 at 2492.310 kb on + strand at 2492.487 kb on - strand, within Dsui_2340 at 2492.624 kb on - strand, within Dsui_2340
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,489,805 - -0.7 2,489,859 + +0.9 2,489,986 + +0.9 2,490,040 + +0.9 2,490,087 + -0.2 2,490,523 + -0.1 2,490,523 + -0.1 2,490,613 + -0.3 2,490,674 + +1.1 2,490,692 + -1.1 2,490,743 - +0.9 2,490,812 + -1.1 2,490,812 + +0.9 2,490,812 + +0.9 2,490,820 - +0.9 2,490,820 - +0.9 2,490,850 + Dsui_2339 0.14 -0.7 2,490,990 - Dsui_2339 0.29 -1.1 2,491,033 + Dsui_2339 0.34 -0.1 2,491,041 + +0.9 2,491,051 + Dsui_2339 0.36 -1.4 2,491,087 - -0.7 2,491,190 - Dsui_2339 0.51 -1.4 2,491,240 - -1.4 2,491,431 - +0.9 2,491,539 + Dsui_2339 0.89 -0.1 2,491,613 + -0.4 2,491,675 + -0.7 2,491,676 - +0.9 2,491,729 + -0.1 2,491,764 - Dsui_2340 0.11 +0.9 2,491,794 - Dsui_2340 0.14 +0.9 2,491,799 - Dsui_2340 0.14 -0.1 2,491,801 - Dsui_2340 0.14 -0.1 2,491,814 - Dsui_2340 0.15 -1.9 2,491,857 + Dsui_2340 0.19 -0.1 2,491,903 - Dsui_2340 0.23 +0.9 2,491,928 + Dsui_2340 0.25 -1.5 2,491,952 + Dsui_2340 0.28 +0.9 2,491,965 + Dsui_2340 0.29 -0.1 2,491,973 + Dsui_2340 0.29 -0.7 2,491,976 - Dsui_2340 0.30 +0.9 2,491,981 - Dsui_2340 0.30 -1.9 2,492,042 - +0.9 2,492,042 - Dsui_2340 0.36 +0.9 2,492,042 - Dsui_2340 0.36 -2.1 2,492,042 - Dsui_2340 0.36 -0.1 2,492,189 - Dsui_2340 0.49 +0.9 2,492,204 - Dsui_2340 0.50 +0.9 2,492,310 + -0.7 2,492,487 - Dsui_2340 0.75 -1.9 2,492,624 - Dsui_2340 0.87 -0.1
Or see this region's nucleotide sequence