Strain Fitness in Dechlorosoma suillum PS around Dsui_2204

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2203 and Dsui_2204 are separated by 132 nucleotidesDsui_2204 and Dsui_2205 are separated by 190 nucleotides Dsui_2203: Dsui_2203 - enoyl-(acyl-carrier-protein) reductase (NADH), at 2,339,185 to 2,339,982 _2203 Dsui_2204: Dsui_2204 - ABC-type dipeptide transport system, periplasmic component, at 2,340,115 to 2,342,286 _2204 Dsui_2205: Dsui_2205 - aconitate hydratase 2, at 2,342,477 to 2,345,074 _2205 Position (kb) 2340 2341 2342 2343Strain fitness (log2 ratio) -2 -1 0 1at 2339.169 kb on + strandat 2340.105 kb on + strandat 2340.207 kb on + strandat 2340.207 kb on + strandat 2340.207 kb on + strandat 2340.215 kb on - strandat 2340.264 kb on + strandat 2340.283 kb on + strandat 2340.283 kb on + strandat 2340.288 kb on + strandat 2340.288 kb on + strandat 2340.291 kb on - strandat 2340.296 kb on - strandat 2340.364 kb on + strand, within Dsui_2204at 2340.446 kb on + strand, within Dsui_2204at 2340.454 kb on - strand, within Dsui_2204at 2340.579 kb on + strand, within Dsui_2204at 2340.580 kb on - strandat 2340.605 kb on + strand, within Dsui_2204at 2340.637 kb on - strandat 2340.717 kb on + strand, within Dsui_2204at 2340.717 kb on + strand, within Dsui_2204at 2340.725 kb on - strand, within Dsui_2204at 2340.800 kb on + strand, within Dsui_2204at 2340.852 kb on + strand, within Dsui_2204at 2340.960 kb on + strand, within Dsui_2204at 2340.998 kb on + strand, within Dsui_2204at 2341.031 kb on + strand, within Dsui_2204at 2341.039 kb on - strand, within Dsui_2204at 2341.101 kb on + strand, within Dsui_2204at 2341.320 kb on + strand, within Dsui_2204at 2341.389 kb on + strand, within Dsui_2204at 2341.549 kb on + strand, within Dsui_2204at 2341.557 kb on - strandat 2341.578 kb on + strand, within Dsui_2204at 2341.636 kb on + strand, within Dsui_2204at 2341.641 kb on + strand, within Dsui_2204at 2341.657 kb on - strand, within Dsui_2204at 2341.703 kb on + strand, within Dsui_2204at 2341.797 kb on + strand, within Dsui_2204at 2341.818 kb on - strandat 2341.906 kb on + strand, within Dsui_2204at 2341.906 kb on + strand, within Dsui_2204at 2341.987 kb on - strand, within Dsui_2204at 2342.077 kb on - strandat 2342.108 kb on - strandat 2342.123 kb on + strandat 2342.274 kb on - strandat 2342.301 kb on + strandat 2342.342 kb on + strandat 2342.368 kb on - strandat 2342.378 kb on + strandat 2342.378 kb on + strandat 2342.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,339,169 + -0.7
2,340,105 + -0.7
2,340,207 + -0.1
2,340,207 + -0.7
2,340,207 + -1.1
2,340,215 - -1.1
2,340,264 + -0.1
2,340,283 + -1.4
2,340,283 + -2.1
2,340,288 + -1.1
2,340,288 + -1.4
2,340,291 - +0.9
2,340,296 - +0.9
2,340,364 + Dsui_2204 0.11 -0.5
2,340,446 + Dsui_2204 0.15 -2.1
2,340,454 - Dsui_2204 0.16 -0.1
2,340,579 + Dsui_2204 0.21 -0.7
2,340,580 - +0.9
2,340,605 + Dsui_2204 0.23 -0.7
2,340,637 - +0.9
2,340,717 + Dsui_2204 0.28 -0.1
2,340,717 + Dsui_2204 0.28 -0.1
2,340,725 - Dsui_2204 0.28 -0.1
2,340,800 + Dsui_2204 0.32 +0.9
2,340,852 + Dsui_2204 0.34 -1.4
2,340,960 + Dsui_2204 0.39 +0.5
2,340,998 + Dsui_2204 0.41 -1.7
2,341,031 + Dsui_2204 0.42 -1.9
2,341,039 - Dsui_2204 0.43 +0.9
2,341,101 + Dsui_2204 0.45 -0.7
2,341,320 + Dsui_2204 0.55 -2.6
2,341,389 + Dsui_2204 0.59 -1.9
2,341,549 + Dsui_2204 0.66 -1.7
2,341,557 - +0.9
2,341,578 + Dsui_2204 0.67 -0.4
2,341,636 + Dsui_2204 0.70 +0.8
2,341,641 + Dsui_2204 0.70 +0.2
2,341,657 - Dsui_2204 0.71 -2.1
2,341,703 + Dsui_2204 0.73 -0.7
2,341,797 + Dsui_2204 0.77 -1.7
2,341,818 - +0.9
2,341,906 + Dsui_2204 0.82 -0.3
2,341,906 + Dsui_2204 0.82 -0.3
2,341,987 - Dsui_2204 0.86 -1.1
2,342,077 - +0.9
2,342,108 - +0.9
2,342,123 + -2.4
2,342,274 - -0.7
2,342,301 + -2.3
2,342,342 + -1.0
2,342,368 - +0.9
2,342,378 + -0.3
2,342,378 + -0.1
2,342,430 + -1.1

Or see this region's nucleotide sequence