Strain Fitness in Dechlorosoma suillum PS around Dsui_1489

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1488 and Dsui_1489 are separated by 28 nucleotidesDsui_1489 and Dsui_1490 are separated by 227 nucleotidesDsui_1490 and Dsui_1491 are separated by 32 nucleotides Dsui_1488: Dsui_1488 - putative metal-dependent hydrolase, at 1,550,640 to 1,551,002 _1488 Dsui_1489: Dsui_1489 - hypothetical protein, at 1,551,031 to 1,552,383 _1489 Dsui_1490: Dsui_1490 - DNA-binding protein, excisionase family, at 1,552,611 to 1,552,883 _1490 Dsui_1491: Dsui_1491 - molecular chaperone (small heat shock protein), at 1,552,916 to 1,553,485 _1491 Position (kb) 1551 1552 1553Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1550.034 kb on - strandat 1550.072 kb on + strandat 1550.140 kb on - strandat 1550.184 kb on + strandat 1550.221 kb on - strandat 1550.273 kb on - strandat 1550.278 kb on - strandat 1550.411 kb on + strandat 1550.419 kb on - strandat 1550.690 kb on - strand, within Dsui_1488at 1550.822 kb on + strand, within Dsui_1488at 1550.894 kb on - strand, within Dsui_1488at 1550.911 kb on - strand, within Dsui_1488at 1550.911 kb on - strand, within Dsui_1488at 1550.920 kb on + strand, within Dsui_1488at 1550.920 kb on + strand, within Dsui_1488at 1551.041 kb on - strandat 1551.091 kb on + strandat 1551.218 kb on - strand, within Dsui_1489at 1551.315 kb on - strand, within Dsui_1489at 1551.400 kb on - strand, within Dsui_1489at 1551.479 kb on - strand, within Dsui_1489at 1551.535 kb on - strandat 1551.596 kb on + strand, within Dsui_1489at 1551.660 kb on + strand, within Dsui_1489at 1551.660 kb on + strand, within Dsui_1489at 1551.698 kb on + strand, within Dsui_1489at 1551.799 kb on - strand, within Dsui_1489at 1551.809 kb on - strand, within Dsui_1489at 1551.809 kb on - strand, within Dsui_1489at 1551.934 kb on + strand, within Dsui_1489at 1551.949 kb on + strand, within Dsui_1489at 1552.041 kb on + strand, within Dsui_1489at 1552.044 kb on - strand, within Dsui_1489at 1552.215 kb on - strand, within Dsui_1489at 1552.255 kb on - strandat 1552.264 kb on + strandat 1552.272 kb on - strandat 1552.411 kb on + strandat 1552.693 kb on - strand, within Dsui_1490at 1552.703 kb on - strand, within Dsui_1490at 1552.781 kb on + strand, within Dsui_1490at 1552.791 kb on + strand, within Dsui_1490at 1552.803 kb on - strand, within Dsui_1490at 1552.971 kb on + strandat 1552.973 kb on + strand, within Dsui_1491at 1552.979 kb on - strand, within Dsui_1491at 1552.997 kb on - strand, within Dsui_1491at 1553.048 kb on - strand, within Dsui_1491at 1553.191 kb on - strand, within Dsui_1491at 1553.209 kb on + strand, within Dsui_1491at 1553.252 kb on + strand, within Dsui_1491at 1553.309 kb on + strand, within Dsui_1491at 1553.351 kb on + strand, within Dsui_1491

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,550,034 - +0.7
1,550,072 + -0.4
1,550,140 - +0.7
1,550,184 + -1.1
1,550,221 - -2.1
1,550,273 - +0.7
1,550,278 - +0.7
1,550,411 + -0.7
1,550,419 - +0.7
1,550,690 - Dsui_1488 0.14 +0.7
1,550,822 + Dsui_1488 0.50 +0.7
1,550,894 - Dsui_1488 0.70 -0.3
1,550,911 - Dsui_1488 0.75 +0.7
1,550,911 - Dsui_1488 0.75 +0.7
1,550,920 + Dsui_1488 0.77 +0.7
1,550,920 + Dsui_1488 0.77 -1.3
1,551,041 - +0.7
1,551,091 + +0.7
1,551,218 - Dsui_1489 0.14 +0.7
1,551,315 - Dsui_1489 0.21 -1.6
1,551,400 - Dsui_1489 0.27 -0.3
1,551,479 - Dsui_1489 0.33 -0.3
1,551,535 - +0.7
1,551,596 + Dsui_1489 0.42 +0.7
1,551,660 + Dsui_1489 0.46 +0.7
1,551,660 + Dsui_1489 0.46 -1.9
1,551,698 + Dsui_1489 0.49 +0.7
1,551,799 - Dsui_1489 0.57 -0.9
1,551,809 - Dsui_1489 0.58 -0.3
1,551,809 - Dsui_1489 0.58 -1.3
1,551,934 + Dsui_1489 0.67 -0.3
1,551,949 + Dsui_1489 0.68 +0.7
1,552,041 + Dsui_1489 0.75 +0.7
1,552,044 - Dsui_1489 0.75 -0.9
1,552,215 - Dsui_1489 0.88 -0.3
1,552,255 - -0.9
1,552,264 + -0.3
1,552,272 - -0.9
1,552,411 + -2.3
1,552,693 - Dsui_1490 0.30 -2.1
1,552,703 - Dsui_1490 0.34 -0.9
1,552,781 + Dsui_1490 0.62 -0.9
1,552,791 + Dsui_1490 0.66 -2.9
1,552,803 - Dsui_1490 0.70 -0.9
1,552,971 + -1.3
1,552,973 + Dsui_1491 0.10 -0.7
1,552,979 - Dsui_1491 0.11 +0.7
1,552,997 - Dsui_1491 0.14 -1.3
1,553,048 - Dsui_1491 0.23 +0.7
1,553,191 - Dsui_1491 0.48 -2.6
1,553,209 + Dsui_1491 0.51 +2.0
1,553,252 + Dsui_1491 0.59 +0.1
1,553,309 + Dsui_1491 0.69 +0.7
1,553,351 + Dsui_1491 0.76 -0.8

Or see this region's nucleotide sequence