Strain Fitness in Dechlorosoma suillum PS around Dsui_1466

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1465 and Dsui_1466 are separated by 963 nucleotidesDsui_1466 and Dsui_1467 are separated by 2 nucleotides Dsui_1465: Dsui_1465 - hypothetical protein, at 1,526,370 to 1,527,881 _1465 Dsui_1466: Dsui_1466 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,528,845 to 1,530,005 _1466 Dsui_1467: Dsui_1467 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,530,008 to 1,531,186 _1467 Position (kb) 1528 1529 1530 1531Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1527.866 kb on + strandat 1527.866 kb on - strandat 1527.896 kb on - strandat 1527.901 kb on + strandat 1527.902 kb on - strandat 1527.903 kb on + strandat 1527.945 kb on + strandat 1527.949 kb on - strandat 1527.958 kb on - strandat 1527.967 kb on - strandat 1527.982 kb on + strandat 1528.003 kb on + strandat 1528.006 kb on + strandat 1528.009 kb on - strandat 1528.009 kb on - strandat 1528.014 kb on + strandat 1528.014 kb on + strandat 1528.014 kb on + strandat 1528.022 kb on - strandat 1528.022 kb on - strandat 1528.022 kb on - strandat 1528.069 kb on - strandat 1528.071 kb on + strandat 1528.081 kb on + strandat 1528.089 kb on - strandat 1528.102 kb on + strandat 1528.102 kb on + strandat 1528.128 kb on + strandat 1528.136 kb on - strandat 1528.136 kb on - strandat 1528.169 kb on + strandat 1528.169 kb on + strandat 1528.169 kb on + strandat 1528.177 kb on - strandat 1528.177 kb on - strandat 1528.177 kb on - strandat 1528.177 kb on - strandat 1528.177 kb on - strandat 1528.201 kb on + strandat 1528.201 kb on + strandat 1528.201 kb on + strandat 1528.201 kb on + strandat 1528.201 kb on + strandat 1528.209 kb on - strandat 1528.209 kb on - strandat 1528.232 kb on + strandat 1528.232 kb on + strandat 1528.232 kb on + strandat 1528.232 kb on + strandat 1528.240 kb on - strandat 1528.250 kb on + strandat 1528.284 kb on - strandat 1528.342 kb on + strandat 1528.342 kb on + strandat 1528.350 kb on - strandat 1528.368 kb on - strandat 1528.384 kb on + strandat 1528.384 kb on + strandat 1528.384 kb on + strandat 1528.384 kb on + strandat 1528.384 kb on + strandat 1528.392 kb on - strandat 1528.392 kb on - strandat 1528.392 kb on - strandat 1528.392 kb on - strandat 1528.396 kb on + strandat 1528.406 kb on + strandat 1528.411 kb on + strandat 1528.414 kb on - strandat 1528.416 kb on + strandat 1528.418 kb on + strandat 1528.418 kb on + strandat 1528.418 kb on + strandat 1528.426 kb on - strandat 1528.438 kb on - strandat 1528.439 kb on - strandat 1528.458 kb on + strandat 1528.466 kb on + strandat 1528.539 kb on - strandat 1528.543 kb on + strandat 1528.551 kb on - strandat 1528.567 kb on + strandat 1528.568 kb on - strandat 1528.568 kb on - strandat 1528.568 kb on - strandat 1528.586 kb on + strandat 1528.587 kb on + strandat 1528.605 kb on - strandat 1528.610 kb on + strandat 1528.620 kb on + strandat 1528.620 kb on + strandat 1528.628 kb on - strandat 1528.628 kb on - strandat 1528.639 kb on - strandat 1528.690 kb on - strandat 1528.732 kb on - strandat 1528.767 kb on + strandat 1528.767 kb on + strandat 1528.783 kb on + strandat 1528.795 kb on - strandat 1528.797 kb on + strandat 1528.797 kb on + strandat 1528.797 kb on + strandat 1528.797 kb on + strandat 1528.864 kb on + strandat 1528.912 kb on + strandat 1528.929 kb on - strandat 1528.942 kb on + strandat 1528.952 kb on + strandat 1528.960 kb on - strandat 1528.963 kb on - strand, within Dsui_1466at 1528.968 kb on - strand, within Dsui_1466at 1529.049 kb on + strand, within Dsui_1466at 1529.057 kb on - strand, within Dsui_1466at 1529.057 kb on - strand, within Dsui_1466at 1529.087 kb on + strand, within Dsui_1466at 1529.087 kb on + strand, within Dsui_1466at 1529.096 kb on - strand, within Dsui_1466at 1529.176 kb on + strand, within Dsui_1466at 1529.176 kb on + strand, within Dsui_1466at 1529.186 kb on + strand, within Dsui_1466at 1529.223 kb on + strand, within Dsui_1466at 1529.306 kb on + strand, within Dsui_1466at 1529.473 kb on - strand, within Dsui_1466at 1529.555 kb on - strand, within Dsui_1466at 1529.675 kb on + strand, within Dsui_1466at 1529.681 kb on + strand, within Dsui_1466at 1529.839 kb on + strand, within Dsui_1466at 1529.893 kb on + strandat 1529.900 kb on + strandat 1530.034 kb on + strandat 1530.047 kb on - strandat 1530.089 kb on - strandat 1530.179 kb on - strand, within Dsui_1467at 1530.393 kb on + strand, within Dsui_1467at 1530.537 kb on + strand, within Dsui_1467at 1530.545 kb on - strand, within Dsui_1467at 1530.545 kb on - strand, within Dsui_1467at 1530.586 kb on + strand, within Dsui_1467at 1530.595 kb on - strand, within Dsui_1467at 1530.742 kb on + strand, within Dsui_1467at 1530.750 kb on - strand, within Dsui_1467at 1530.775 kb on + strand, within Dsui_1467at 1530.800 kb on - strand, within Dsui_1467at 1530.880 kb on + strand, within Dsui_1467at 1530.904 kb on - strandat 1530.996 kb on - strand, within Dsui_1467

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,527,866 + -0.9
1,527,866 - +0.7
1,527,896 - +0.7
1,527,901 + -1.3
1,527,902 - +0.7
1,527,903 + -1.3
1,527,945 + -2.1
1,527,949 - -3.1
1,527,958 - -0.3
1,527,967 - -0.3
1,527,982 + -0.3
1,528,003 + +0.7
1,528,006 + +0.7
1,528,009 - -0.3
1,528,009 - -0.9
1,528,014 + -1.3
1,528,014 + -0.9
1,528,014 + -0.3
1,528,022 - +0.7
1,528,022 - +0.7
1,528,022 - +0.7
1,528,069 - -0.3
1,528,071 + -0.3
1,528,081 + +0.7
1,528,089 - +0.7
1,528,102 + -0.9
1,528,102 + +0.7
1,528,128 + -0.3
1,528,136 - +0.7
1,528,136 - +0.7
1,528,169 + +0.7
1,528,169 + +0.7
1,528,169 + +0.7
1,528,177 - -0.3
1,528,177 - +0.7
1,528,177 - +0.7
1,528,177 - -1.3
1,528,177 - -1.3
1,528,201 + +0.7
1,528,201 + +0.7
1,528,201 + -0.3
1,528,201 + +0.7
1,528,201 + +0.7
1,528,209 - -0.3
1,528,209 - +0.7
1,528,232 + -3.1
1,528,232 + -0.3
1,528,232 + -0.9
1,528,232 + +0.7
1,528,240 - -1.6
1,528,250 + -2.9
1,528,284 - -1.3
1,528,342 + +0.7
1,528,342 + +0.7
1,528,350 - +0.7
1,528,368 - -1.9
1,528,384 + -0.3
1,528,384 + -1.3
1,528,384 + -2.1
1,528,384 + +0.7
1,528,384 + +0.7
1,528,392 - +0.7
1,528,392 - -0.9
1,528,392 - -1.3
1,528,392 - +0.7
1,528,396 + -0.9
1,528,406 + +0.7
1,528,411 + -1.3
1,528,414 - +0.7
1,528,416 + +1.7
1,528,418 + -0.3
1,528,418 + -0.9
1,528,418 + -1.9
1,528,426 - +0.7
1,528,438 - -0.9
1,528,439 - -0.3
1,528,458 + -1.6
1,528,466 + +0.7
1,528,539 - -0.3
1,528,543 + +0.7
1,528,551 - -0.3
1,528,567 + -0.3
1,528,568 - +0.7
1,528,568 - +0.7
1,528,568 - +0.7
1,528,586 + -0.3
1,528,587 + -0.3
1,528,605 - -0.3
1,528,610 + -1.3
1,528,620 + -0.3
1,528,620 + -1.9
1,528,628 - -1.3
1,528,628 - +0.7
1,528,639 - -0.3
1,528,690 - -0.3
1,528,732 - +0.7
1,528,767 + +0.7
1,528,767 + -0.3
1,528,783 + +0.7
1,528,795 - +0.7
1,528,797 + -0.3
1,528,797 + -0.3
1,528,797 + -1.3
1,528,797 + +0.7
1,528,864 + -0.9
1,528,912 + +0.7
1,528,929 - -0.9
1,528,942 + +0.7
1,528,952 + +0.7
1,528,960 - +0.7
1,528,963 - Dsui_1466 0.10 -1.3
1,528,968 - Dsui_1466 0.11 +0.7
1,529,049 + Dsui_1466 0.18 -1.3
1,529,057 - Dsui_1466 0.18 -0.3
1,529,057 - Dsui_1466 0.18 -0.3
1,529,087 + Dsui_1466 0.21 -0.9
1,529,087 + Dsui_1466 0.21 -1.9
1,529,096 - Dsui_1466 0.22 -1.9
1,529,176 + Dsui_1466 0.29 -0.1
1,529,176 + Dsui_1466 0.29 -3.9
1,529,186 + Dsui_1466 0.29 -0.9
1,529,223 + Dsui_1466 0.33 -1.2
1,529,306 + Dsui_1466 0.40 +0.7
1,529,473 - Dsui_1466 0.54 -1.6
1,529,555 - Dsui_1466 0.61 -1.6
1,529,675 + Dsui_1466 0.71 -0.8
1,529,681 + Dsui_1466 0.72 -2.5
1,529,839 + Dsui_1466 0.86 -0.3
1,529,893 + -0.7
1,529,900 + -0.4
1,530,034 + -0.9
1,530,047 - -1.3
1,530,089 - -1.9
1,530,179 - Dsui_1467 0.15 -1.3
1,530,393 + Dsui_1467 0.33 -0.5
1,530,537 + Dsui_1467 0.45 -0.7
1,530,545 - Dsui_1467 0.46 -0.9
1,530,545 - Dsui_1467 0.46 -0.3
1,530,586 + Dsui_1467 0.49 +0.7
1,530,595 - Dsui_1467 0.50 -0.9
1,530,742 + Dsui_1467 0.62 -0.8
1,530,750 - Dsui_1467 0.63 -0.9
1,530,775 + Dsui_1467 0.65 -0.9
1,530,800 - Dsui_1467 0.67 -1.9
1,530,880 + Dsui_1467 0.74 -0.8
1,530,904 - +0.7
1,530,996 - Dsui_1467 0.84 -1.3

Or see this region's nucleotide sequence