Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1393 and Dsui_1394 overlap by 4 nucleotides Dsui_1394 and Dsui_1395 are separated by 279 nucleotides
Dsui_1393: Dsui_1393 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,450,854 to 1,452,560
_1393
Dsui_1394: Dsui_1394 - hypothetical protein, at 1,452,557 to 1,453,534
_1394
Dsui_1395: Dsui_1395 - MSHA-type pilus biogenesis protein MshL, at 1,453,814 to 1,455,718
_1395
Position (kb)
1452
1453
1454 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1451.639 kb on + strand at 1451.639 kb on + strand, within Dsui_1393 at 1451.639 kb on + strand at 1451.647 kb on - strand at 1451.656 kb on + strand at 1451.668 kb on + strand, within Dsui_1393 at 1451.668 kb on - strand, within Dsui_1393 at 1451.932 kb on + strand, within Dsui_1393 at 1452.105 kb on - strand at 1452.112 kb on - strand, within Dsui_1393 at 1452.278 kb on - strand at 1452.462 kb on - strand at 1452.661 kb on - strand, within Dsui_1394 at 1452.784 kb on - strand, within Dsui_1394 at 1452.797 kb on + strand, within Dsui_1394 at 1452.830 kb on - strand, within Dsui_1394 at 1452.892 kb on - strand, within Dsui_1394 at 1453.053 kb on - strand at 1453.103 kb on - strand, within Dsui_1394 at 1453.431 kb on - strand, within Dsui_1394 at 1453.468 kb on - strand at 1453.789 kb on - strand at 1453.791 kb on + strand at 1454.147 kb on + strand, within Dsui_1395 at 1454.148 kb on + strand, within Dsui_1395 at 1454.205 kb on + strand at 1454.206 kb on + strand at 1454.253 kb on + strand, within Dsui_1395 at 1454.282 kb on + strand at 1454.352 kb on + strand at 1454.402 kb on + strand, within Dsui_1395 at 1454.456 kb on - strand, within Dsui_1395 at 1454.467 kb on + strand at 1454.467 kb on - strand, within Dsui_1395
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,451,639 + +0.6 1,451,639 + Dsui_1393 0.46 +0.6 1,451,639 + +0.6 1,451,647 - -0.4 1,451,656 + -0.4 1,451,668 + Dsui_1393 0.48 -0.4 1,451,668 - Dsui_1393 0.48 +0.6 1,451,932 + Dsui_1393 0.63 -0.4 1,452,105 - +0.6 1,452,112 - Dsui_1393 0.74 +0.6 1,452,278 - +0.6 1,452,462 - -0.4 1,452,661 - Dsui_1394 0.11 +0.6 1,452,784 - Dsui_1394 0.23 -1.9 1,452,797 + Dsui_1394 0.25 -0.9 1,452,830 - Dsui_1394 0.28 -1.7 1,452,892 - Dsui_1394 0.34 -1.3 1,453,053 - +1.6 1,453,103 - Dsui_1394 0.56 -1.4 1,453,431 - Dsui_1394 0.89 -1.4 1,453,468 - +0.6 1,453,789 - -0.7 1,453,791 + -0.4 1,454,147 + Dsui_1395 0.17 -0.9 1,454,148 + Dsui_1395 0.18 -0.4 1,454,205 + -0.9 1,454,206 + +0.6 1,454,253 + Dsui_1395 0.23 -0.4 1,454,282 + +0.6 1,454,352 + +0.6 1,454,402 + Dsui_1395 0.31 -0.4 1,454,456 - Dsui_1395 0.34 +3.2 1,454,467 + +0.6 1,454,467 - Dsui_1395 0.34 -0.9
Or see this region's nucleotide sequence