Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1006 and Dsui_1007 are separated by 113 nucleotides Dsui_1007 and Dsui_1008 are separated by 63 nucleotides Dsui_1008 and Dsui_1009 are separated by 121 nucleotides
Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282
_1006
Dsui_1007: Dsui_1007 - arabinose efflux permease family protein, at 1,034,396 to 1,035,610
_1007
Dsui_1008: Dsui_1008 - Uncharacterized protein conserved in bacteria (DUF2242), at 1,035,674 to 1,036,201
_1008
Dsui_1009: Dsui_1009 - PAS domain S-box, at 1,036,323 to 1,040,168
_1009
Position (kb)
1034
1035
1036 Strain fitness (log2 ratio)
-2
-1
0
1 at 1033.403 kb on - strand at 1033.413 kb on - strand at 1033.712 kb on - strand, within Dsui_1006 at 1033.737 kb on - strand, within Dsui_1006 at 1033.758 kb on - strand, within Dsui_1006 at 1033.845 kb on + strand, within Dsui_1006 at 1033.884 kb on + strand, within Dsui_1006 at 1033.908 kb on - strand, within Dsui_1006 at 1033.985 kb on + strand, within Dsui_1006 at 1033.990 kb on + strand at 1034.149 kb on - strand, within Dsui_1006 at 1034.159 kb on + strand, within Dsui_1006 at 1034.166 kb on - strand, within Dsui_1006 at 1034.179 kb on + strand at 1034.253 kb on - strand at 1034.405 kb on + strand at 1034.482 kb on + strand at 1034.484 kb on + strand at 1034.484 kb on + strand at 1034.530 kb on - strand, within Dsui_1007 at 1034.530 kb on - strand, within Dsui_1007 at 1034.707 kb on - strand, within Dsui_1007 at 1034.867 kb on - strand, within Dsui_1007 at 1034.912 kb on + strand, within Dsui_1007 at 1035.189 kb on - strand, within Dsui_1007 at 1035.219 kb on - strand, within Dsui_1007 at 1035.244 kb on - strand, within Dsui_1007 at 1035.282 kb on + strand, within Dsui_1007 at 1035.308 kb on + strand, within Dsui_1007 at 1035.308 kb on + strand, within Dsui_1007 at 1035.341 kb on + strand, within Dsui_1007 at 1035.426 kb on + strand, within Dsui_1007 at 1035.488 kb on - strand, within Dsui_1007 at 1035.612 kb on - strand at 1035.797 kb on - strand, within Dsui_1008 at 1035.894 kb on + strand, within Dsui_1008 at 1035.965 kb on - strand, within Dsui_1008 at 1036.016 kb on - strand, within Dsui_1008 at 1036.094 kb on - strand, within Dsui_1008 at 1036.159 kb on + strand at 1036.165 kb on + strand at 1036.169 kb on + strand at 1036.169 kb on + strand at 1036.174 kb on + strand at 1036.182 kb on - strand at 1036.320 kb on + strand at 1036.320 kb on + strand at 1036.333 kb on - strand at 1036.349 kb on + strand at 1036.357 kb on - strand at 1036.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,033,403 - -0.8 1,033,413 - -0.0 1,033,712 - Dsui_1006 0.38 -0.4 1,033,737 - Dsui_1006 0.41 -0.2 1,033,758 - Dsui_1006 0.43 -0.8 1,033,845 + Dsui_1006 0.52 -1.2 1,033,884 + Dsui_1006 0.57 -2.0 1,033,908 - Dsui_1006 0.59 -0.3 1,033,985 + Dsui_1006 0.68 -1.5 1,033,990 + +0.8 1,034,149 - Dsui_1006 0.85 +0.4 1,034,159 + Dsui_1006 0.87 +0.8 1,034,166 - Dsui_1006 0.87 -0.3 1,034,179 + +0.8 1,034,253 - -0.8 1,034,405 + -0.0 1,034,482 + -0.2 1,034,484 + -2.0 1,034,484 + -0.3 1,034,530 - Dsui_1007 0.11 -2.3 1,034,530 - Dsui_1007 0.11 -2.0 1,034,707 - Dsui_1007 0.26 -1.2 1,034,867 - Dsui_1007 0.39 -1.2 1,034,912 + Dsui_1007 0.42 -0.9 1,035,189 - Dsui_1007 0.65 -0.8 1,035,219 - Dsui_1007 0.68 -0.8 1,035,244 - Dsui_1007 0.70 +0.8 1,035,282 + Dsui_1007 0.73 -0.1 1,035,308 + Dsui_1007 0.75 -1.1 1,035,308 + Dsui_1007 0.75 -1.1 1,035,341 + Dsui_1007 0.78 -1.2 1,035,426 + Dsui_1007 0.85 -2.2 1,035,488 - Dsui_1007 0.90 -2.3 1,035,612 - +0.8 1,035,797 - Dsui_1008 0.23 -1.1 1,035,894 + Dsui_1008 0.42 +0.8 1,035,965 - Dsui_1008 0.55 -0.0 1,036,016 - Dsui_1008 0.65 -0.4 1,036,094 - Dsui_1008 0.80 -0.4 1,036,159 + -0.2 1,036,165 + +0.8 1,036,169 + -0.2 1,036,169 + +0.8 1,036,174 + -0.8 1,036,182 - -0.6 1,036,320 + -1.5 1,036,320 + -0.2 1,036,333 - +0.8 1,036,349 + -1.2 1,036,357 - -1.5 1,036,537 - -1.8
Or see this region's nucleotide sequence