Strain Fitness in Dechlorosoma suillum PS around Dsui_1007

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1006 and Dsui_1007 are separated by 113 nucleotidesDsui_1007 and Dsui_1008 are separated by 63 nucleotidesDsui_1008 and Dsui_1009 are separated by 121 nucleotides Dsui_1006: Dsui_1006 - transcriptional regulator, at 1,033,362 to 1,034,282 _1006 Dsui_1007: Dsui_1007 - arabinose efflux permease family protein, at 1,034,396 to 1,035,610 _1007 Dsui_1008: Dsui_1008 - Uncharacterized protein conserved in bacteria (DUF2242), at 1,035,674 to 1,036,201 _1008 Dsui_1009: Dsui_1009 - PAS domain S-box, at 1,036,323 to 1,040,168 _1009 Position (kb) 1034 1035 1036Strain fitness (log2 ratio) -2 -1 0 1at 1033.403 kb on - strandat 1033.413 kb on - strandat 1033.712 kb on - strand, within Dsui_1006at 1033.737 kb on - strand, within Dsui_1006at 1033.758 kb on - strand, within Dsui_1006at 1033.845 kb on + strand, within Dsui_1006at 1033.884 kb on + strand, within Dsui_1006at 1033.908 kb on - strand, within Dsui_1006at 1033.985 kb on + strand, within Dsui_1006at 1033.990 kb on + strandat 1034.149 kb on - strand, within Dsui_1006at 1034.159 kb on + strand, within Dsui_1006at 1034.166 kb on - strand, within Dsui_1006at 1034.179 kb on + strandat 1034.253 kb on - strandat 1034.405 kb on + strandat 1034.482 kb on + strandat 1034.484 kb on + strandat 1034.484 kb on + strandat 1034.530 kb on - strand, within Dsui_1007at 1034.530 kb on - strand, within Dsui_1007at 1034.707 kb on - strand, within Dsui_1007at 1034.867 kb on - strand, within Dsui_1007at 1034.912 kb on + strand, within Dsui_1007at 1035.189 kb on - strand, within Dsui_1007at 1035.219 kb on - strand, within Dsui_1007at 1035.244 kb on - strand, within Dsui_1007at 1035.282 kb on + strand, within Dsui_1007at 1035.308 kb on + strand, within Dsui_1007at 1035.308 kb on + strand, within Dsui_1007at 1035.341 kb on + strand, within Dsui_1007at 1035.426 kb on + strand, within Dsui_1007at 1035.488 kb on - strand, within Dsui_1007at 1035.612 kb on - strandat 1035.797 kb on - strand, within Dsui_1008at 1035.894 kb on + strand, within Dsui_1008at 1035.965 kb on - strand, within Dsui_1008at 1036.016 kb on - strand, within Dsui_1008at 1036.094 kb on - strand, within Dsui_1008at 1036.159 kb on + strandat 1036.165 kb on + strandat 1036.169 kb on + strandat 1036.169 kb on + strandat 1036.174 kb on + strandat 1036.182 kb on - strandat 1036.320 kb on + strandat 1036.320 kb on + strandat 1036.333 kb on - strandat 1036.349 kb on + strandat 1036.357 kb on - strandat 1036.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,033,403 - -0.8
1,033,413 - -0.0
1,033,712 - Dsui_1006 0.38 -0.4
1,033,737 - Dsui_1006 0.41 -0.2
1,033,758 - Dsui_1006 0.43 -0.8
1,033,845 + Dsui_1006 0.52 -1.2
1,033,884 + Dsui_1006 0.57 -2.0
1,033,908 - Dsui_1006 0.59 -0.3
1,033,985 + Dsui_1006 0.68 -1.5
1,033,990 + +0.8
1,034,149 - Dsui_1006 0.85 +0.4
1,034,159 + Dsui_1006 0.87 +0.8
1,034,166 - Dsui_1006 0.87 -0.3
1,034,179 + +0.8
1,034,253 - -0.8
1,034,405 + -0.0
1,034,482 + -0.2
1,034,484 + -2.0
1,034,484 + -0.3
1,034,530 - Dsui_1007 0.11 -2.3
1,034,530 - Dsui_1007 0.11 -2.0
1,034,707 - Dsui_1007 0.26 -1.2
1,034,867 - Dsui_1007 0.39 -1.2
1,034,912 + Dsui_1007 0.42 -0.9
1,035,189 - Dsui_1007 0.65 -0.8
1,035,219 - Dsui_1007 0.68 -0.8
1,035,244 - Dsui_1007 0.70 +0.8
1,035,282 + Dsui_1007 0.73 -0.1
1,035,308 + Dsui_1007 0.75 -1.1
1,035,308 + Dsui_1007 0.75 -1.1
1,035,341 + Dsui_1007 0.78 -1.2
1,035,426 + Dsui_1007 0.85 -2.2
1,035,488 - Dsui_1007 0.90 -2.3
1,035,612 - +0.8
1,035,797 - Dsui_1008 0.23 -1.1
1,035,894 + Dsui_1008 0.42 +0.8
1,035,965 - Dsui_1008 0.55 -0.0
1,036,016 - Dsui_1008 0.65 -0.4
1,036,094 - Dsui_1008 0.80 -0.4
1,036,159 + -0.2
1,036,165 + +0.8
1,036,169 + -0.2
1,036,169 + +0.8
1,036,174 + -0.8
1,036,182 - -0.6
1,036,320 + -1.5
1,036,320 + -0.2
1,036,333 - +0.8
1,036,349 + -1.2
1,036,357 - -1.5
1,036,537 - -1.8

Or see this region's nucleotide sequence