Strain Fitness in Dechlorosoma suillum PS around Dsui_0632

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0630 and Dsui_0631 are separated by 189 nucleotidesDsui_0631 and Dsui_0632 are separated by 50 nucleotidesDsui_0632 and Dsui_0633 are separated by 54 nucleotides Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812 _0630 Dsui_0631: Dsui_0631 - cytochrome c551/c552, at 625,002 to 625,310 _0631 Dsui_0632: Dsui_0632 - thioredoxin domain-containing protein, at 625,361 to 627,409 _0632 Dsui_0633: Dsui_0633 - transcriptional regulator, at 627,464 to 628,369 _0633 Position (kb) 625 626 627 628Strain fitness (log2 ratio) -2 -1 0 1at 624.447 kb on - strand, within Dsui_0630at 624.460 kb on + strand, within Dsui_0630at 624.468 kb on - strand, within Dsui_0630at 624.491 kb on - strand, within Dsui_0630at 624.496 kb on + strand, within Dsui_0630at 624.504 kb on - strand, within Dsui_0630at 624.506 kb on + strand, within Dsui_0630at 624.547 kb on - strand, within Dsui_0630at 624.559 kb on - strand, within Dsui_0630at 624.654 kb on + strand, within Dsui_0630at 624.777 kb on + strandat 624.780 kb on - strandat 624.790 kb on - strandat 624.793 kb on + strandat 625.011 kb on + strandat 625.019 kb on - strandat 625.021 kb on + strandat 625.127 kb on - strand, within Dsui_0631at 625.230 kb on + strand, within Dsui_0631at 625.250 kb on + strand, within Dsui_0631at 625.401 kb on + strandat 625.603 kb on + strand, within Dsui_0632at 625.685 kb on - strand, within Dsui_0632at 625.741 kb on - strand, within Dsui_0632at 625.748 kb on + strand, within Dsui_0632at 625.793 kb on + strand, within Dsui_0632at 625.903 kb on + strandat 625.918 kb on + strand, within Dsui_0632at 625.938 kb on + strand, within Dsui_0632at 626.089 kb on - strand, within Dsui_0632at 626.160 kb on + strand, within Dsui_0632at 626.160 kb on + strand, within Dsui_0632at 626.184 kb on + strand, within Dsui_0632at 626.291 kb on + strand, within Dsui_0632at 626.292 kb on + strandat 626.401 kb on - strand, within Dsui_0632at 626.409 kb on - strand, within Dsui_0632at 626.433 kb on + strand, within Dsui_0632at 626.554 kb on + strand, within Dsui_0632at 626.568 kb on + strand, within Dsui_0632at 626.643 kb on - strand, within Dsui_0632at 626.837 kb on + strand, within Dsui_0632at 626.857 kb on + strand, within Dsui_0632at 626.879 kb on - strand, within Dsui_0632at 626.889 kb on - strand, within Dsui_0632at 626.934 kb on + strand, within Dsui_0632at 626.934 kb on + strand, within Dsui_0632at 626.942 kb on - strand, within Dsui_0632at 626.942 kb on - strand, within Dsui_0632at 626.942 kb on - strand, within Dsui_0632at 626.942 kb on - strand, within Dsui_0632at 626.990 kb on + strand, within Dsui_0632at 627.143 kb on - strand, within Dsui_0632at 627.175 kb on + strand, within Dsui_0632at 627.241 kb on - strandat 627.261 kb on - strandat 627.381 kb on - strandat 627.462 kb on + strandat 627.497 kb on - strandat 627.627 kb on - strand, within Dsui_0633at 627.673 kb on - strand, within Dsui_0633at 627.741 kb on - strand, within Dsui_0633at 627.883 kb on - strand, within Dsui_0633at 627.943 kb on - strand, within Dsui_0633at 627.988 kb on + strand, within Dsui_0633at 627.996 kb on - strand, within Dsui_0633at 627.996 kb on - strand, within Dsui_0633at 627.996 kb on - strand, within Dsui_0633at 627.999 kb on + strand, within Dsui_0633at 628.004 kb on + strand, within Dsui_0633at 628.012 kb on - strand, within Dsui_0633at 628.012 kb on - strand, within Dsui_0633at 628.075 kb on - strand, within Dsui_0633at 628.135 kb on + strand, within Dsui_0633at 628.215 kb on + strand, within Dsui_0633at 628.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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624,447 - Dsui_0630 0.72 -0.5
624,460 + Dsui_0630 0.73 -2.2
624,468 - Dsui_0630 0.74 -0.4
624,491 - Dsui_0630 0.75 -0.4
624,496 + Dsui_0630 0.76 -1.8
624,504 - Dsui_0630 0.76 -0.5
624,506 + Dsui_0630 0.76 +0.8
624,547 - Dsui_0630 0.80 -0.5
624,559 - Dsui_0630 0.81 -0.1
624,654 + Dsui_0630 0.88 -1.8
624,777 + +0.8
624,780 - -0.3
624,790 - -0.0
624,793 + +0.8
625,011 + -1.8
625,019 - +0.1
625,021 + -1.8
625,127 - Dsui_0631 0.40 +0.3
625,230 + Dsui_0631 0.74 -0.8
625,250 + Dsui_0631 0.80 -1.2
625,401 + -0.2
625,603 + Dsui_0632 0.12 -1.2
625,685 - Dsui_0632 0.16 -0.0
625,741 - Dsui_0632 0.19 -0.6
625,748 + Dsui_0632 0.19 +0.8
625,793 + Dsui_0632 0.21 -0.8
625,903 + +0.8
625,918 + Dsui_0632 0.27 -1.2
625,938 + Dsui_0632 0.28 +0.8
626,089 - Dsui_0632 0.36 +0.1
626,160 + Dsui_0632 0.39 -1.5
626,160 + Dsui_0632 0.39 +0.8
626,184 + Dsui_0632 0.40 -1.5
626,291 + Dsui_0632 0.45 +0.8
626,292 + +0.8
626,401 - Dsui_0632 0.51 -0.1
626,409 - Dsui_0632 0.51 -0.2
626,433 + Dsui_0632 0.52 -0.2
626,554 + Dsui_0632 0.58 +0.8
626,568 + Dsui_0632 0.59 -1.8
626,643 - Dsui_0632 0.63 -0.3
626,837 + Dsui_0632 0.72 -0.8
626,857 + Dsui_0632 0.73 -2.5
626,879 - Dsui_0632 0.74 -0.1
626,889 - Dsui_0632 0.75 -0.1
626,934 + Dsui_0632 0.77 -1.5
626,934 + Dsui_0632 0.77 -1.8
626,942 - Dsui_0632 0.77 -0.3
626,942 - Dsui_0632 0.77 -1.8
626,942 - Dsui_0632 0.77 -0.2
626,942 - Dsui_0632 0.77 -0.2
626,990 + Dsui_0632 0.80 +0.8
627,143 - Dsui_0632 0.87 +0.0
627,175 + Dsui_0632 0.89 -1.2
627,241 - -0.3
627,261 - -0.1
627,381 - +0.2
627,462 + +0.8
627,497 - -0.2
627,627 - Dsui_0633 0.18 -0.6
627,673 - Dsui_0633 0.23 -2.6
627,741 - Dsui_0633 0.31 -0.6
627,883 - Dsui_0633 0.46 -0.3
627,943 - Dsui_0633 0.53 -0.2
627,988 + Dsui_0633 0.58 +0.8
627,996 - Dsui_0633 0.59 -0.2
627,996 - Dsui_0633 0.59 -0.1
627,996 - Dsui_0633 0.59 -0.4
627,999 + Dsui_0633 0.59 -0.8
628,004 + Dsui_0633 0.60 +0.8
628,012 - Dsui_0633 0.60 -0.3
628,012 - Dsui_0633 0.60 -0.4
628,075 - Dsui_0633 0.67 -0.1
628,135 + Dsui_0633 0.74 +0.8
628,215 + Dsui_0633 0.83 -0.2
628,340 - +0.0

Or see this region's nucleotide sequence