Strain Fitness in Dechlorosoma suillum PS around Dsui_0385

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0384 and Dsui_0385 are separated by 52 nucleotidesDsui_0385 and Dsui_0386 overlap by 4 nucleotidesDsui_0386 and Dsui_0387 are separated by 55 nucleotides Dsui_0384: Dsui_0384 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 383,964 to 385,313 _0384 Dsui_0385: Dsui_0385 - hypothetical protein, at 385,366 to 385,977 _0385 Dsui_0386: Dsui_0386 - thiol-disulfide isomerase-like thioredoxin, at 385,974 to 386,522 _0386 Dsui_0387: Dsui_0387 - 3-dehydroquinate dehydratase, type II, at 386,578 to 387,078 _0387 Position (kb) 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1at 384.640 kb on + strand, within Dsui_0384at 384.823 kb on + strand, within Dsui_0384at 384.858 kb on - strand, within Dsui_0384at 384.943 kb on + strandat 384.943 kb on + strandat 384.961 kb on - strand, within Dsui_0384at 385.040 kb on - strand, within Dsui_0384at 385.055 kb on - strand, within Dsui_0384at 385.257 kb on - strandat 385.262 kb on - strandat 385.270 kb on - strandat 385.281 kb on - strandat 385.282 kb on + strandat 385.328 kb on + strandat 385.351 kb on - strandat 385.360 kb on - strandat 385.369 kb on + strandat 385.371 kb on - strandat 385.372 kb on - strandat 385.736 kb on + strand, within Dsui_0385at 385.745 kb on + strand, within Dsui_0385at 385.745 kb on + strand, within Dsui_0385at 385.754 kb on - strandat 385.787 kb on + strand, within Dsui_0385at 385.787 kb on + strand, within Dsui_0385at 385.856 kb on + strand, within Dsui_0385at 385.856 kb on + strand, within Dsui_0385at 385.864 kb on + strand, within Dsui_0385at 385.869 kb on + strand, within Dsui_0385at 385.877 kb on - strand, within Dsui_0385at 385.887 kb on - strand, within Dsui_0385at 385.887 kb on - strand, within Dsui_0385at 385.887 kb on - strand, within Dsui_0385at 385.963 kb on - strandat 386.139 kb on + strand, within Dsui_0386at 386.151 kb on + strand, within Dsui_0386at 386.170 kb on + strand, within Dsui_0386at 386.170 kb on + strand, within Dsui_0386at 386.178 kb on - strandat 386.180 kb on + strand, within Dsui_0386at 386.214 kb on - strand, within Dsui_0386at 386.214 kb on - strand, within Dsui_0386at 386.229 kb on - strand, within Dsui_0386at 386.280 kb on - strand, within Dsui_0386at 386.295 kb on + strand, within Dsui_0386at 386.295 kb on + strand, within Dsui_0386at 386.303 kb on - strand, within Dsui_0386at 386.428 kb on + strand, within Dsui_0386at 386.461 kb on - strand, within Dsui_0386at 386.570 kb on - strandat 386.575 kb on + strandat 386.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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384,640 + Dsui_0384 0.50 -1.3
384,823 + Dsui_0384 0.64 -0.8
384,858 - Dsui_0384 0.66 +0.7
384,943 + +0.7
384,943 + +0.7
384,961 - Dsui_0384 0.74 -2.0
385,040 - Dsui_0384 0.80 -1.8
385,055 - Dsui_0384 0.81 -0.3
385,257 - -0.2
385,262 - -1.2
385,270 - -1.3
385,281 - -1.8
385,282 + -0.3
385,328 + -3.2
385,351 - +0.2
385,360 - +0.7
385,369 + -0.9
385,371 - +0.7
385,372 - +0.7
385,736 + Dsui_0385 0.60 -1.1
385,745 + Dsui_0385 0.62 -1.6
385,745 + Dsui_0385 0.62 -0.8
385,754 - +0.7
385,787 + Dsui_0385 0.69 -1.6
385,787 + Dsui_0385 0.69 +0.7
385,856 + Dsui_0385 0.80 -0.5
385,856 + Dsui_0385 0.80 -0.8
385,864 + Dsui_0385 0.81 -0.3
385,869 + Dsui_0385 0.82 -0.1
385,877 - Dsui_0385 0.83 -1.6
385,887 - Dsui_0385 0.85 -0.8
385,887 - Dsui_0385 0.85 -1.3
385,887 - Dsui_0385 0.85 -0.8
385,963 - -1.3
386,139 + Dsui_0386 0.30 +0.7
386,151 + Dsui_0386 0.32 +0.0
386,170 + Dsui_0386 0.36 -1.0
386,170 + Dsui_0386 0.36 -0.3
386,178 - +0.7
386,180 + Dsui_0386 0.38 -1.7
386,214 - Dsui_0386 0.44 +0.7
386,214 - Dsui_0386 0.44 -1.8
386,229 - Dsui_0386 0.46 -0.3
386,280 - Dsui_0386 0.56 -1.6
386,295 + Dsui_0386 0.58 -0.5
386,295 + Dsui_0386 0.58 -1.6
386,303 - Dsui_0386 0.60 +0.7
386,428 + Dsui_0386 0.83 -0.4
386,461 - Dsui_0386 0.89 +0.7
386,570 - -2.6
386,575 + -0.6
386,613 + -0.4

Or see this region's nucleotide sequence