Strain Fitness in Dechlorosoma suillum PS around Dsui_0290

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0288 and Dsui_0289 are separated by 443 nucleotidesDsui_0289 and Dsui_0290 overlap by 4 nucleotidesDsui_0290 and Dsui_0291 are separated by 104 nucleotides Dsui_0288: Dsui_0288 - hypothetical protein, at 287,380 to 287,595 _0288 Dsui_0289: Dsui_0289 - putative membrane protein, at 288,039 to 288,356 _0289 Dsui_0290: Dsui_0290 - SSS sodium solute transporter, at 288,353 to 290,101 _0290 Dsui_0291: Dsui_0291 - tellurite resistance protein-like permease, at 290,206 to 291,273 _0291 Position (kb) 288 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 287.469 kb on + strand, within Dsui_0288at 287.479 kb on + strand, within Dsui_0288at 287.487 kb on - strand, within Dsui_0288at 287.506 kb on + strand, within Dsui_0288at 287.531 kb on + strand, within Dsui_0288at 287.539 kb on - strand, within Dsui_0288at 287.563 kb on - strand, within Dsui_0288at 287.565 kb on + strand, within Dsui_0288at 287.565 kb on + strand, within Dsui_0288at 287.565 kb on + strand, within Dsui_0288at 287.575 kb on + strandat 287.584 kb on + strandat 287.699 kb on + strandat 287.744 kb on + strandat 287.744 kb on + strandat 287.747 kb on - strandat 288.046 kb on + strandat 288.047 kb on + strandat 288.051 kb on + strandat 288.051 kb on + strandat 288.059 kb on - strandat 288.099 kb on + strand, within Dsui_0289at 288.204 kb on - strand, within Dsui_0289at 288.243 kb on + strand, within Dsui_0289at 288.323 kb on - strand, within Dsui_0289at 288.333 kb on + strandat 288.379 kb on - strandat 288.386 kb on + strandat 288.387 kb on + strandat 288.392 kb on + strandat 288.395 kb on - strandat 288.395 kb on - strandat 288.449 kb on + strandat 288.502 kb on + strandat 288.555 kb on - strand, within Dsui_0290at 288.555 kb on - strand, within Dsui_0290at 288.668 kb on + strand, within Dsui_0290at 288.676 kb on - strand, within Dsui_0290at 288.799 kb on - strand, within Dsui_0290at 288.816 kb on + strand, within Dsui_0290at 288.816 kb on + strand, within Dsui_0290at 288.837 kb on + strand, within Dsui_0290at 288.882 kb on + strand, within Dsui_0290at 288.893 kb on + strand, within Dsui_0290at 288.941 kb on + strand, within Dsui_0290at 288.947 kb on + strandat 288.968 kb on + strand, within Dsui_0290at 289.028 kb on + strand, within Dsui_0290at 289.028 kb on - strand, within Dsui_0290at 289.055 kb on - strand, within Dsui_0290at 289.078 kb on - strand, within Dsui_0290at 289.155 kb on - strand, within Dsui_0290at 289.157 kb on + strand, within Dsui_0290at 289.183 kb on + strand, within Dsui_0290at 289.189 kb on - strand, within Dsui_0290at 289.197 kb on - strand, within Dsui_0290at 289.256 kb on + strand, within Dsui_0290at 289.264 kb on - strand, within Dsui_0290at 289.289 kb on + strand, within Dsui_0290at 289.292 kb on - strand, within Dsui_0290at 289.568 kb on + strand, within Dsui_0290at 289.568 kb on + strand, within Dsui_0290at 289.577 kb on - strand, within Dsui_0290at 289.606 kb on + strand, within Dsui_0290at 289.614 kb on - strand, within Dsui_0290at 289.622 kb on - strand, within Dsui_0290at 289.632 kb on + strand, within Dsui_0290at 289.677 kb on + strand, within Dsui_0290at 289.685 kb on - strand, within Dsui_0290at 289.685 kb on - strand, within Dsui_0290at 289.708 kb on + strand, within Dsui_0290at 289.737 kb on + strand, within Dsui_0290at 289.756 kb on - strand, within Dsui_0290at 289.798 kb on - strand, within Dsui_0290at 289.870 kb on + strand, within Dsui_0290at 289.870 kb on + strand, within Dsui_0290at 289.878 kb on - strand, within Dsui_0290at 289.878 kb on - strand, within Dsui_0290at 289.878 kb on - strand, within Dsui_0290at 290.125 kb on + strandat 290.133 kb on - strandat 290.224 kb on - strandat 290.229 kb on - strandat 290.247 kb on + strandat 290.252 kb on + strandat 290.260 kb on - strandat 290.307 kb on + strandat 290.317 kb on - strand, within Dsui_0291at 290.325 kb on - strand, within Dsui_0291at 290.339 kb on + strand, within Dsui_0291at 290.368 kb on + strand, within Dsui_0291at 290.411 kb on + strand, within Dsui_0291at 290.449 kb on - strand, within Dsui_0291at 290.498 kb on - strand, within Dsui_0291at 290.604 kb on + strand, within Dsui_0291at 290.671 kb on + strandat 290.755 kb on + strand, within Dsui_0291at 290.841 kb on + strand, within Dsui_0291at 290.963 kb on + strand, within Dsui_0291at 291.024 kb on - strand, within Dsui_0291at 291.024 kb on - strand, within Dsui_0291at 291.090 kb on + strandat 291.090 kb on + strandat 291.098 kb on - strand, within Dsui_0291

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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287,469 + Dsui_0288 0.41 -0.2
287,479 + Dsui_0288 0.46 -0.3
287,487 - Dsui_0288 0.50 -0.8
287,506 + Dsui_0288 0.58 -0.4
287,531 + Dsui_0288 0.70 -0.1
287,539 - Dsui_0288 0.74 +2.4
287,563 - Dsui_0288 0.85 -0.8
287,565 + Dsui_0288 0.86 +0.1
287,565 + Dsui_0288 0.86 -0.4
287,565 + Dsui_0288 0.86 +0.1
287,575 + -0.2
287,584 + -0.2
287,699 + +0.1
287,744 + +0.8
287,744 + -1.6
287,747 - -1.8
288,046 + +1.8
288,047 + -0.8
288,051 + +1.2
288,051 + +1.8
288,059 - +0.8
288,099 + Dsui_0289 0.19 +2.0
288,204 - Dsui_0289 0.52 -1.6
288,243 + Dsui_0289 0.64 +1.1
288,323 - Dsui_0289 0.89 +0.8
288,333 + +1.8
288,379 - +0.8
288,386 + +1.8
288,387 + +1.4
288,392 + +1.8
288,395 - -0.2
288,395 - +0.8
288,449 + +1.8
288,502 + +1.2
288,555 - Dsui_0290 0.12 +0.8
288,555 - Dsui_0290 0.12 +0.8
288,668 + Dsui_0290 0.18 +1.6
288,676 - Dsui_0290 0.18 +0.8
288,799 - Dsui_0290 0.26 +0.7
288,816 + Dsui_0290 0.26 +1.9
288,816 + Dsui_0290 0.26 +2.7
288,837 + Dsui_0290 0.28 +0.9
288,882 + Dsui_0290 0.30 +2.2
288,893 + Dsui_0290 0.31 +2.2
288,941 + Dsui_0290 0.34 +2.1
288,947 + +2.3
288,968 + Dsui_0290 0.35 +1.8
289,028 + Dsui_0290 0.39 +1.3
289,028 - Dsui_0290 0.39 +0.7
289,055 - Dsui_0290 0.40 +0.7
289,078 - Dsui_0290 0.41 -0.3
289,155 - Dsui_0290 0.46 +0.7
289,157 + Dsui_0290 0.46 +0.0
289,183 + Dsui_0290 0.47 +1.5
289,189 - Dsui_0290 0.48 -1.3
289,197 - Dsui_0290 0.48 +0.7
289,256 + Dsui_0290 0.52 +0.1
289,264 - Dsui_0290 0.52 -0.8
289,289 + Dsui_0290 0.54 +2.4
289,292 - Dsui_0290 0.54 -2.4
289,568 + Dsui_0290 0.69 +1.6
289,568 + Dsui_0290 0.69 +2.1
289,577 - Dsui_0290 0.70 -1.6
289,606 + Dsui_0290 0.72 +1.6
289,614 - Dsui_0290 0.72 +2.4
289,622 - Dsui_0290 0.73 -2.1
289,632 + Dsui_0290 0.73 +1.9
289,677 + Dsui_0290 0.76 +2.2
289,685 - Dsui_0290 0.76 -3.3
289,685 - Dsui_0290 0.76 -0.3
289,708 + Dsui_0290 0.77 +0.7
289,737 + Dsui_0290 0.79 +1.1
289,756 - Dsui_0290 0.80 -2.1
289,798 - Dsui_0290 0.83 -0.3
289,870 + Dsui_0290 0.87 +0.8
289,870 + Dsui_0290 0.87 +1.0
289,878 - Dsui_0290 0.87 -2.1
289,878 - Dsui_0290 0.87 -1.8
289,878 - Dsui_0290 0.87 -0.3
290,125 + -0.1
290,133 - +0.7
290,224 - -0.8
290,229 - +0.7
290,247 + +0.7
290,252 + +0.7
290,260 - -0.3
290,307 + +0.7
290,317 - Dsui_0291 0.10 -0.8
290,325 - Dsui_0291 0.11 -1.3
290,339 + Dsui_0291 0.12 -0.3
290,368 + Dsui_0291 0.15 +0.7
290,411 + Dsui_0291 0.19 +0.7
290,449 - Dsui_0291 0.23 -2.1
290,498 - Dsui_0291 0.27 -0.1
290,604 + Dsui_0291 0.37 -2.1
290,671 + +0.7
290,755 + Dsui_0291 0.51 +0.7
290,841 + Dsui_0291 0.59 -1.3
290,963 + Dsui_0291 0.71 +0.7
291,024 - Dsui_0291 0.77 -2.1
291,024 - Dsui_0291 0.77 +0.7
291,090 + +0.7
291,090 + +0.7
291,098 - Dsui_0291 0.84 -0.3

Or see this region's nucleotide sequence