Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00155

Experiment: PYE 0.5x 25C survival rep2 12 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00153 and CCNA_00154 overlap by 61 nucleotidesCCNA_00154 and CCNA_00155 are separated by 177 nucleotidesCCNA_00155 and CCNA_00156 are separated by 132 nucleotidesCCNA_00156 and CCNA_00157 are separated by 70 nucleotides CCNA_00153: CCNA_00153 - adenine nucleotide exchange factor GrpE, at 162,409 to 163,035 _00153 CCNA_00154: CCNA_00154 - hypothetical protein, at 162,975 to 163,235 _00154 CCNA_00155: CCNA_00155 - DNA polymerase III, beta chain, at 163,413 to 164,531 _00155 CCNA_00156: CCNA_00156 - ArsR-family transcriptional regulator, at 164,664 to 164,951 _00156 CCNA_00157: CCNA_00157 - glyoxalase family protein, at 165,022 to 165,393 _00157 Position (kb) 163 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 162.937 kb on - strand, within CCNA_00153at 162.952 kb on - strand, within CCNA_00153at 162.972 kb on + strand, within CCNA_00153at 162.973 kb on - strandat 162.980 kb on - strandat 162.981 kb on - strandat 163.031 kb on - strandat 163.104 kb on + strand, within CCNA_00154at 163.112 kb on - strand, within CCNA_00154at 163.113 kb on - strand, within CCNA_00154at 163.117 kb on + strand, within CCNA_00154at 163.117 kb on + strandat 163.117 kb on + strand, within CCNA_00154at 163.158 kb on + strand, within CCNA_00154at 163.165 kb on + strand, within CCNA_00154at 163.171 kb on - strand, within CCNA_00154at 163.171 kb on - strand, within CCNA_00154at 163.178 kb on - strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.209 kb on + strand, within CCNA_00154at 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.217 kb on - strandat 163.218 kb on + strandat 163.218 kb on + strandat 163.218 kb on + strandat 163.223 kb on + strandat 163.226 kb on - strandat 163.226 kb on - strandat 163.226 kb on - strandat 163.231 kb on - strandat 163.233 kb on + strandat 163.289 kb on - strandat 163.297 kb on - strandat 163.304 kb on - strandat 163.348 kb on + strandat 163.365 kb on + strandat 164.525 kb on + strandat 164.525 kb on + strandat 164.609 kb on + strandat 164.609 kb on + strandat 164.612 kb on + strandat 164.612 kb on - strandat 164.618 kb on + strandat 164.627 kb on - strandat 164.627 kb on - strandat 164.637 kb on + strandat 164.645 kb on - strandat 164.650 kb on - strandat 164.694 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.696 kb on + strand, within CCNA_00156at 164.703 kb on + strand, within CCNA_00156at 164.704 kb on - strand, within CCNA_00156at 164.704 kb on - strand, within CCNA_00156at 164.711 kb on - strand, within CCNA_00156at 164.712 kb on + strand, within CCNA_00156at 164.738 kb on - strand, within CCNA_00156at 164.745 kb on + strand, within CCNA_00156at 164.745 kb on + strand, within CCNA_00156at 164.750 kb on + strand, within CCNA_00156at 164.753 kb on - strand, within CCNA_00156at 164.781 kb on + strand, within CCNA_00156at 164.793 kb on + strand, within CCNA_00156at 164.798 kb on + strand, within CCNA_00156at 164.803 kb on + strand, within CCNA_00156at 164.823 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.868 kb on + strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.876 kb on - strand, within CCNA_00156at 164.911 kb on + strand, within CCNA_00156at 164.913 kb on + strand, within CCNA_00156at 164.919 kb on - strand, within CCNA_00156at 164.943 kb on - strandat 164.943 kb on - strandat 164.944 kb on - strandat 164.946 kb on + strandat 165.018 kb on + strandat 165.018 kb on + strandat 165.018 kb on + strandat 165.026 kb on - strandat 165.026 kb on - strandat 165.026 kb on - strandat 165.033 kb on + strandat 165.071 kb on - strand, within CCNA_00157at 165.077 kb on - strand, within CCNA_00157at 165.077 kb on - strand, within CCNA_00157at 165.162 kb on - strand, within CCNA_00157at 165.253 kb on - strand, within CCNA_00157at 165.263 kb on - strand, within CCNA_00157at 165.278 kb on + strand, within CCNA_00157at 165.278 kb on + strand, within CCNA_00157at 165.286 kb on - strand, within CCNA_00157at 165.286 kb on - strand, within CCNA_00157at 165.295 kb on + strand, within CCNA_00157at 165.297 kb on + strand, within CCNA_00157at 165.305 kb on - strand, within CCNA_00157at 165.307 kb on - strand, within CCNA_00157at 165.325 kb on + strand, within CCNA_00157at 165.330 kb on + strand, within CCNA_00157at 165.338 kb on - strand, within CCNA_00157at 165.377 kb on + strandat 165.377 kb on - strandat 165.385 kb on - strandat 165.421 kb on - strandat 165.428 kb on + strandat 165.447 kb on + strandat 165.466 kb on - strandat 165.506 kb on - strandat 165.522 kb on - strandat 165.522 kb on - strandat 165.522 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep2 12 days
remove
162,937 - CCNA_00153 0.84 -1.8
162,952 - CCNA_00153 0.87 -2.4
162,972 + CCNA_00153 0.90 -0.8
162,973 - -1.1
162,980 - -2.4
162,981 - -2.3
163,031 - -0.4
163,104 + CCNA_00154 0.49 +1.4
163,112 - CCNA_00154 0.52 -0.1
163,113 - CCNA_00154 0.53 -0.4
163,117 + CCNA_00154 0.54 +0.1
163,117 + +2.0
163,117 + CCNA_00154 0.54 +0.6
163,158 + CCNA_00154 0.70 +0.1
163,165 + CCNA_00154 0.73 -0.3
163,171 - CCNA_00154 0.75 +0.5
163,171 - CCNA_00154 0.75 -0.4
163,178 - CCNA_00154 0.78 -0.5
163,209 + CCNA_00154 0.90 +0.6
163,209 + CCNA_00154 0.90 -0.1
163,209 + CCNA_00154 0.90 +0.2
163,209 + CCNA_00154 0.90 +0.3
163,209 + CCNA_00154 0.90 -0.2
163,209 + CCNA_00154 0.90 -0.3
163,217 - +0.2
163,217 - -0.5
163,217 - -0.8
163,217 - -0.5
163,217 - -0.9
163,217 - -0.6
163,217 - -1.4
163,218 + +0.6
163,218 + -1.3
163,218 + -0.0
163,223 + +0.2
163,226 - +1.1
163,226 - -0.1
163,226 - -0.5
163,231 - +0.7
163,233 + +0.1
163,289 - +0.3
163,297 - -0.3
163,304 - -1.3
163,348 + -1.3
163,365 + -1.6
164,525 + +0.8
164,525 + +0.4
164,609 + +0.1
164,609 + -0.3
164,612 + +0.0
164,612 - -0.0
164,618 + -0.7
164,627 - -0.8
164,627 - -0.6
164,637 + -0.3
164,645 - +0.3
164,650 - -1.2
164,694 + CCNA_00156 0.10 -0.0
164,696 + CCNA_00156 0.11 -0.8
164,696 + CCNA_00156 0.11 -0.1
164,696 + CCNA_00156 0.11 -0.1
164,703 + CCNA_00156 0.14 -0.0
164,704 - CCNA_00156 0.14 +0.0
164,704 - CCNA_00156 0.14 -0.2
164,711 - CCNA_00156 0.16 -0.7
164,712 + CCNA_00156 0.17 -0.1
164,738 - CCNA_00156 0.26 -2.1
164,745 + CCNA_00156 0.28 -0.1
164,745 + CCNA_00156 0.28 -0.3
164,750 + CCNA_00156 0.30 +0.6
164,753 - CCNA_00156 0.31 -1.7
164,781 + CCNA_00156 0.41 +0.2
164,793 + CCNA_00156 0.45 +0.0
164,798 + CCNA_00156 0.47 +0.3
164,803 + CCNA_00156 0.48 -0.5
164,823 + CCNA_00156 0.55 +0.6
164,868 + CCNA_00156 0.71 +0.1
164,868 + CCNA_00156 0.71 -0.3
164,868 + CCNA_00156 0.71 -1.0
164,876 - CCNA_00156 0.74 -0.8
164,876 - CCNA_00156 0.74 +0.5
164,876 - CCNA_00156 0.74 -1.0
164,911 + CCNA_00156 0.86 +0.3
164,913 + CCNA_00156 0.86 -0.2
164,919 - CCNA_00156 0.89 +0.3
164,943 - +0.3
164,943 - -1.2
164,944 - -0.8
164,946 + +0.5
165,018 + +0.2
165,018 + +0.3
165,018 + +1.5
165,026 - -1.7
165,026 - -0.0
165,026 - -0.3
165,033 + +0.2
165,071 - CCNA_00157 0.13 -0.1
165,077 - CCNA_00157 0.15 +0.0
165,077 - CCNA_00157 0.15 +2.0
165,162 - CCNA_00157 0.38 +0.0
165,253 - CCNA_00157 0.62 +0.8
165,263 - CCNA_00157 0.65 +0.0
165,278 + CCNA_00157 0.69 +0.7
165,278 + CCNA_00157 0.69 +0.1
165,286 - CCNA_00157 0.71 +0.4
165,286 - CCNA_00157 0.71 +2.0
165,295 + CCNA_00157 0.73 +0.1
165,297 + CCNA_00157 0.74 +0.9
165,305 - CCNA_00157 0.76 -1.7
165,307 - CCNA_00157 0.77 -0.6
165,325 + CCNA_00157 0.81 -2.1
165,330 + CCNA_00157 0.83 -0.6
165,338 - CCNA_00157 0.85 -0.7
165,377 + +0.4
165,377 - +0.5
165,385 - -0.8
165,421 - +0.4
165,428 + -0.1
165,447 + -1.0
165,466 - +0.5
165,506 - +0.4
165,522 - -0.4
165,522 - -0.2
165,522 - +0.4

Or see this region's nucleotide sequence