Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00009

Experiment: PYE 0.5x 25C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00008 and CCNA_00009 are separated by 61 nucleotidesCCNA_00009 and CCNA_00010 are separated by 374 nucleotides CCNA_00008: CCNA_00008 - chromosome replication initiator protein DnaA, at 5,636 to 7,108 _00008 CCNA_00009: CCNA_00009 - alkylated DNA repair protein AlkB, at 7,170 to 7,790 _00009 CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060 _00010 Position (kb) 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 7.124 kb on + strandat 7.137 kb on - strandat 7.139 kb on + strandat 7.185 kb on - strandat 7.193 kb on + strandat 7.198 kb on + strandat 7.227 kb on + strandat 7.279 kb on + strand, within CCNA_00009at 7.287 kb on - strand, within CCNA_00009at 7.299 kb on - strand, within CCNA_00009at 7.354 kb on + strand, within CCNA_00009at 7.359 kb on + strand, within CCNA_00009at 7.367 kb on - strand, within CCNA_00009at 7.377 kb on - strand, within CCNA_00009at 7.384 kb on + strand, within CCNA_00009at 7.440 kb on - strand, within CCNA_00009at 7.459 kb on + strand, within CCNA_00009at 7.467 kb on - strand, within CCNA_00009at 7.467 kb on - strand, within CCNA_00009at 7.497 kb on + strand, within CCNA_00009at 7.497 kb on + strand, within CCNA_00009at 7.505 kb on - strandat 7.505 kb on - strand, within CCNA_00009at 7.507 kb on + strand, within CCNA_00009at 7.507 kb on + strand, within CCNA_00009at 7.507 kb on + strand, within CCNA_00009at 7.526 kb on - strand, within CCNA_00009at 7.548 kb on - strand, within CCNA_00009at 7.548 kb on - strand, within CCNA_00009at 7.566 kb on + strand, within CCNA_00009at 7.603 kb on - strand, within CCNA_00009at 7.622 kb on + strand, within CCNA_00009at 7.643 kb on + strand, within CCNA_00009at 7.657 kb on + strand, within CCNA_00009at 7.657 kb on + strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.665 kb on - strand, within CCNA_00009at 7.692 kb on + strand, within CCNA_00009at 7.692 kb on + strand, within CCNA_00009at 7.700 kb on - strand, within CCNA_00009at 7.700 kb on - strand, within CCNA_00009at 7.700 kb on - strand, within CCNA_00009at 7.742 kb on - strandat 7.758 kb on + strandat 7.759 kb on - strandat 7.759 kb on - strandat 7.763 kb on + strandat 7.770 kb on + strandat 7.796 kb on - strandat 7.807 kb on + strandat 7.930 kb on + strandat 7.930 kb on + strandat 7.931 kb on + strandat 7.938 kb on - strandat 7.938 kb on - strandat 7.938 kb on - strandat 7.938 kb on - strandat 7.939 kb on - strandat 7.939 kb on - strandat 7.958 kb on - strandat 7.989 kb on - strandat 7.999 kb on + strandat 8.002 kb on - strandat 8.039 kb on + strandat 8.039 kb on + strandat 8.047 kb on - strandat 8.055 kb on - strandat 8.110 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.140 kb on + strandat 8.148 kb on - strandat 8.148 kb on - strandat 8.165 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 25C survival rep2 12 days
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7,124 + -0.2
7,137 - +0.4
7,139 + +0.6
7,185 - +0.0
7,193 + +0.2
7,198 + +0.2
7,227 + -0.1
7,279 + CCNA_00009 0.18 -0.0
7,287 - CCNA_00009 0.19 -1.1
7,299 - CCNA_00009 0.21 -0.1
7,354 + CCNA_00009 0.30 +0.1
7,359 + CCNA_00009 0.30 -0.6
7,367 - CCNA_00009 0.32 +0.5
7,377 - CCNA_00009 0.33 -0.2
7,384 + CCNA_00009 0.34 +0.4
7,440 - CCNA_00009 0.43 +0.4
7,459 + CCNA_00009 0.47 -0.3
7,467 - CCNA_00009 0.48 -0.5
7,467 - CCNA_00009 0.48 -0.8
7,497 + CCNA_00009 0.53 +0.3
7,497 + CCNA_00009 0.53 +0.9
7,505 - +3.0
7,505 - CCNA_00009 0.54 +0.8
7,507 + CCNA_00009 0.54 -1.7
7,507 + CCNA_00009 0.54 -1.5
7,507 + CCNA_00009 0.54 +0.5
7,526 - CCNA_00009 0.57 -0.1
7,548 - CCNA_00009 0.61 -0.1
7,548 - CCNA_00009 0.61 -0.6
7,566 + CCNA_00009 0.64 +0.3
7,603 - CCNA_00009 0.70 -0.9
7,622 + CCNA_00009 0.73 +0.9
7,643 + CCNA_00009 0.76 -2.5
7,657 + CCNA_00009 0.78 +1.3
7,657 + CCNA_00009 0.78 +0.9
7,665 - CCNA_00009 0.80 -0.1
7,665 - CCNA_00009 0.80 -0.8
7,665 - CCNA_00009 0.80 +0.1
7,665 - CCNA_00009 0.80 +0.8
7,692 + CCNA_00009 0.84 +0.2
7,692 + CCNA_00009 0.84 -0.8
7,700 - CCNA_00009 0.85 -0.3
7,700 - CCNA_00009 0.85 +0.1
7,700 - CCNA_00009 0.85 +0.0
7,742 - +0.9
7,758 + +0.1
7,759 - -0.1
7,759 - +0.2
7,763 + -0.7
7,770 + -0.0
7,796 - +0.0
7,807 + -0.4
7,930 + -1.8
7,930 + -0.6
7,931 + +0.1
7,938 - -1.3
7,938 - +1.1
7,938 - -1.2
7,938 - -0.0
7,939 - -2.1
7,939 - -1.9
7,958 - -2.3
7,989 - -2.9
7,999 + -2.4
8,002 - +2.0
8,039 + -0.2
8,039 + -0.4
8,047 - -3.5
8,055 - -2.1
8,110 + +0.4
8,140 + +0.1
8,140 + +0.8
8,140 + +0.5
8,140 + -2.3
8,148 - -0.1
8,148 - -0.6
8,165 - -1.8

Or see this region's nucleotide sequence