Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27400 and BWI76_RS27405 are separated by 275 nucleotides BWI76_RS27405 and BWI76_RS27410 are separated by 5 nucleotides BWI76_RS27410 and BWI76_RS27415 overlap by 6 nucleotides BWI76_RS27415 and BWI76_RS27420 are separated by 83 nucleotides BWI76_RS27420 and BWI76_RS27425 are separated by 54 nucleotides
BWI76_RS27400: BWI76_RS27400 - chloride channel protein, at 5,684,883 to 5,686,142
_RS27400
BWI76_RS27405: BWI76_RS27405 - membrane protein, at 5,686,418 to 5,687,035
_RS27405
BWI76_RS27410: BWI76_RS27410 - DNA ligase B, at 5,687,041 to 5,688,717
_RS27410
BWI76_RS27415: BWI76_RS27415 - hypothetical protein, at 5,688,712 to 5,688,891
_RS27415
BWI76_RS27420: BWI76_RS27420 - guanylate kinase, at 5,688,975 to 5,689,598
_RS27420
BWI76_RS27425: BWI76_RS27425 - DNA-directed RNA polymerase subunit omega, at 5,689,653 to 5,689,928
_RS27425
Position (kb) 5687
5688
5689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5686.152 kb on + strand at 5686.224 kb on + strand at 5686.224 kb on + strand at 5686.231 kb on - strand at 5686.231 kb on - strand at 5686.232 kb on - strand at 5686.421 kb on - strand at 5686.421 kb on - strand at 5686.460 kb on + strand at 5686.545 kb on - strand, within BWI76_RS27405 at 5686.590 kb on + strand, within BWI76_RS27405 at 5686.592 kb on + strand, within BWI76_RS27405 at 5686.598 kb on - strand, within BWI76_RS27405 at 5686.634 kb on + strand, within BWI76_RS27405 at 5686.784 kb on + strand, within BWI76_RS27405 at 5686.816 kb on - strand, within BWI76_RS27405 at 5686.846 kb on - strand, within BWI76_RS27405 at 5686.864 kb on - strand, within BWI76_RS27405 at 5686.899 kb on - strand, within BWI76_RS27405 at 5686.899 kb on - strand at 5686.986 kb on + strand at 5687.283 kb on + strand, within BWI76_RS27410 at 5687.316 kb on + strand, within BWI76_RS27410 at 5687.413 kb on - strand, within BWI76_RS27410 at 5687.515 kb on + strand, within BWI76_RS27410 at 5687.515 kb on + strand, within BWI76_RS27410 at 5687.557 kb on + strand, within BWI76_RS27410 at 5687.557 kb on + strand, within BWI76_RS27410 at 5687.580 kb on - strand, within BWI76_RS27410 at 5687.757 kb on + strand, within BWI76_RS27410 at 5687.786 kb on - strand, within BWI76_RS27410 at 5687.941 kb on - strand, within BWI76_RS27410 at 5688.026 kb on - strand, within BWI76_RS27410 at 5688.059 kb on + strand, within BWI76_RS27410 at 5688.066 kb on + strand, within BWI76_RS27410 at 5688.121 kb on - strand, within BWI76_RS27410 at 5688.185 kb on - strand, within BWI76_RS27410 at 5688.202 kb on - strand, within BWI76_RS27410 at 5688.246 kb on - strand, within BWI76_RS27410 at 5688.287 kb on + strand, within BWI76_RS27410 at 5688.565 kb on + strand at 5688.570 kb on - strand at 5688.581 kb on + strand at 5688.632 kb on + strand at 5688.632 kb on + strand at 5688.693 kb on - strand at 5688.900 kb on + strand at 5688.900 kb on + strand at 5688.908 kb on - strand at 5688.926 kb on - strand at 5688.926 kb on - strand at 5688.926 kb on - strand at 5689.709 kb on + strand, within BWI76_RS27425
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 5,686,152 + +0.4 5,686,224 + -0.3 5,686,224 + +0.3 5,686,231 - +0.2 5,686,231 - -1.8 5,686,232 - +1.4 5,686,421 - +0.0 5,686,421 - -0.1 5,686,460 + -1.1 5,686,545 - BWI76_RS27405 0.21 -1.2 5,686,590 + BWI76_RS27405 0.28 +0.7 5,686,592 + BWI76_RS27405 0.28 +0.8 5,686,598 - BWI76_RS27405 0.29 -1.5 5,686,634 + BWI76_RS27405 0.35 -0.8 5,686,784 + BWI76_RS27405 0.59 -3.3 5,686,816 - BWI76_RS27405 0.64 +1.0 5,686,846 - BWI76_RS27405 0.69 -0.6 5,686,864 - BWI76_RS27405 0.72 +1.1 5,686,899 - BWI76_RS27405 0.78 -0.8 5,686,899 - +4.1 5,686,986 + -1.4 5,687,283 + BWI76_RS27410 0.14 +0.9 5,687,316 + BWI76_RS27410 0.16 -0.7 5,687,413 - BWI76_RS27410 0.22 -2.3 5,687,515 + BWI76_RS27410 0.28 +0.2 5,687,515 + BWI76_RS27410 0.28 +0.9 5,687,557 + BWI76_RS27410 0.31 +1.7 5,687,557 + BWI76_RS27410 0.31 -0.0 5,687,580 - BWI76_RS27410 0.32 +0.4 5,687,757 + BWI76_RS27410 0.43 -0.5 5,687,786 - BWI76_RS27410 0.44 -1.7 5,687,941 - BWI76_RS27410 0.54 +0.4 5,688,026 - BWI76_RS27410 0.59 +0.3 5,688,059 + BWI76_RS27410 0.61 -0.9 5,688,066 + BWI76_RS27410 0.61 +1.2 5,688,121 - BWI76_RS27410 0.64 +1.0 5,688,185 - BWI76_RS27410 0.68 +0.3 5,688,202 - BWI76_RS27410 0.69 -0.0 5,688,246 - BWI76_RS27410 0.72 +3.4 5,688,287 + BWI76_RS27410 0.74 +0.3 5,688,565 + -1.2 5,688,570 - +0.8 5,688,581 + -2.4 5,688,632 + -2.7 5,688,632 + +0.5 5,688,693 - -1.3 5,688,900 + +0.5 5,688,900 + -0.2 5,688,908 - -0.6 5,688,926 - +0.9 5,688,926 - -0.0 5,688,926 - -0.0 5,689,709 + BWI76_RS27425 0.20 -1.3
Or see this region's nucleotide sequence