Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22840

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS22835 and BWI76_RS22840 overlap by 35 nucleotidesBWI76_RS22840 and BWI76_RS22845 are separated by 399 nucleotidesBWI76_RS22845 and BWI76_RS22850 are separated by 2 nucleotides BWI76_RS22835: BWI76_RS22835 - MFS transporter, at 4,765,256 to 4,766,614 _RS22835 BWI76_RS22840: BWI76_RS22840 - transposase, at 4,766,580 to 4,766,699 _RS22840 BWI76_RS22845: BWI76_RS22845 - flavodoxin, at 4,767,099 to 4,767,542 _RS22845 BWI76_RS22850: BWI76_RS22850 - tRNA pseudouridine synthase TruC, at 4,767,545 to 4,768,339 _RS22850 Position (kb) 4766 4767Strain fitness (log2 ratio) -3 -2 -1 0 1at 4765.785 kb on + strand, within BWI76_RS22835at 4765.866 kb on + strand, within BWI76_RS22835at 4765.938 kb on - strand, within BWI76_RS22835at 4766.094 kb on - strand, within BWI76_RS22835at 4766.145 kb on + strand, within BWI76_RS22835at 4766.169 kb on + strand, within BWI76_RS22835at 4766.495 kb on + strandat 4766.527 kb on - strandat 4766.553 kb on + strandat 4766.674 kb on - strand, within BWI76_RS22840at 4766.769 kb on + strandat 4766.791 kb on + strandat 4766.832 kb on + strandat 4766.892 kb on - strandat 4766.995 kb on - strandat 4767.042 kb on + strandat 4767.083 kb on - strandat 4767.118 kb on - strandat 4767.212 kb on - strand, within BWI76_RS22845at 4767.252 kb on - strand, within BWI76_RS22845at 4767.291 kb on + strand, within BWI76_RS22845at 4767.299 kb on - strand, within BWI76_RS22845at 4767.335 kb on + strand, within BWI76_RS22845at 4767.408 kb on + strand, within BWI76_RS22845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
4,765,785 + BWI76_RS22835 0.39 -0.7
4,765,866 + BWI76_RS22835 0.45 +0.6
4,765,938 - BWI76_RS22835 0.50 +0.0
4,766,094 - BWI76_RS22835 0.62 -1.7
4,766,145 + BWI76_RS22835 0.65 -2.9
4,766,169 + BWI76_RS22835 0.67 -1.1
4,766,495 + +1.5
4,766,527 - +0.2
4,766,553 + +0.1
4,766,674 - BWI76_RS22840 0.78 -1.4
4,766,769 + -0.7
4,766,791 + -0.5
4,766,832 + -0.4
4,766,892 - +0.5
4,766,995 - -0.4
4,767,042 + +0.1
4,767,083 - -0.9
4,767,118 - +0.1
4,767,212 - BWI76_RS22845 0.25 -3.4
4,767,252 - BWI76_RS22845 0.34 +0.1
4,767,291 + BWI76_RS22845 0.43 +1.1
4,767,299 - BWI76_RS22845 0.45 +0.0
4,767,335 + BWI76_RS22845 0.53 +0.7
4,767,408 + BWI76_RS22845 0.70 +0.9

Or see this region's nucleotide sequence