Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20335 and BWI76_RS20340 are separated by 257 nucleotides BWI76_RS20340 and BWI76_RS20345 are separated by 291 nucleotides BWI76_RS20345 and BWI76_RS20350 are separated by 136 nucleotides
BWI76_RS20335: BWI76_RS20335 - zinc transporter, at 4,257,019 to 4,257,801
_RS20335
BWI76_RS20340: BWI76_RS20340 - histidine ABC transporter substrate-binding protein HisJ, at 4,258,059 to 4,258,841
_RS20340
BWI76_RS20345: BWI76_RS20345 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 4,259,133 to 4,259,702
_RS20345
BWI76_RS20350: BWI76_RS20350 - amidophosphoribosyltransferase, at 4,259,839 to 4,261,356
_RS20350
Position (kb) 4258
4259 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4257.586 kb on - strand, within BWI76_RS20335 at 4257.598 kb on + strand, within BWI76_RS20335 at 4257.680 kb on + strand, within BWI76_RS20335 at 4257.705 kb on - strand, within BWI76_RS20335 at 4257.814 kb on - strand at 4258.239 kb on + strand, within BWI76_RS20340 at 4258.417 kb on - strand, within BWI76_RS20340 at 4258.419 kb on + strand, within BWI76_RS20340 at 4258.829 kb on - strand at 4258.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 4,257,586 - BWI76_RS20335 0.72 +0.2 4,257,598 + BWI76_RS20335 0.74 +1.5 4,257,680 + BWI76_RS20335 0.84 +0.6 4,257,705 - BWI76_RS20335 0.88 +0.3 4,257,814 - -1.3 4,258,239 + BWI76_RS20340 0.23 -3.5 4,258,417 - BWI76_RS20340 0.46 +0.2 4,258,419 + BWI76_RS20340 0.46 -1.2 4,258,829 - +1.3 4,258,848 + -0.1
Or see this region's nucleotide sequence