Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16840

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16835 and BWI76_RS16840 are separated by 195 nucleotidesBWI76_RS16840 and BWI76_RS16845 overlap by 7 nucleotidesBWI76_RS16845 and BWI76_RS16850 overlap by 20 nucleotides BWI76_RS16835: BWI76_RS16835 - TonB-dependent siderophore receptor, at 3,490,225 to 3,492,378 _RS16835 BWI76_RS16840: BWI76_RS16840 - ABC transporter, at 3,492,574 to 3,493,362 _RS16840 BWI76_RS16845: BWI76_RS16845 - ABC transporter permease, at 3,493,356 to 3,494,351 _RS16845 BWI76_RS16850: BWI76_RS16850 - ABC transporter periplasmic substrate-binding protein, at 3,494,332 to 3,495,369 _RS16850 Position (kb) 3492 3493 3494Strain fitness (log2 ratio) -1 0 1 2at 3491.591 kb on + strand, within BWI76_RS16835at 3491.597 kb on - strand, within BWI76_RS16835at 3491.789 kb on + strand, within BWI76_RS16835at 3491.808 kb on + strand, within BWI76_RS16835at 3491.847 kb on + strand, within BWI76_RS16835at 3491.871 kb on + strand, within BWI76_RS16835at 3492.086 kb on + strand, within BWI76_RS16835at 3492.127 kb on - strand, within BWI76_RS16835at 3492.297 kb on - strandat 3492.470 kb on + strandat 3492.531 kb on + strandat 3492.735 kb on - strand, within BWI76_RS16840at 3492.765 kb on + strand, within BWI76_RS16840at 3493.165 kb on - strand, within BWI76_RS16840at 3493.403 kb on + strandat 3493.432 kb on - strandat 3493.441 kb on + strandat 3493.480 kb on + strand, within BWI76_RS16845at 3493.493 kb on - strand, within BWI76_RS16845at 3493.651 kb on - strand, within BWI76_RS16845at 3493.715 kb on - strand, within BWI76_RS16845at 3493.903 kb on - strand, within BWI76_RS16845at 3493.919 kb on + strand, within BWI76_RS16845at 3494.251 kb on + strand, within BWI76_RS16845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
3,491,591 + BWI76_RS16835 0.63 -1.0
3,491,597 - BWI76_RS16835 0.64 -0.1
3,491,789 + BWI76_RS16835 0.73 -1.6
3,491,808 + BWI76_RS16835 0.73 -0.6
3,491,847 + BWI76_RS16835 0.75 +0.5
3,491,871 + BWI76_RS16835 0.76 +1.1
3,492,086 + BWI76_RS16835 0.86 -1.6
3,492,127 - BWI76_RS16835 0.88 -0.7
3,492,297 - -1.1
3,492,470 + -1.0
3,492,531 + -0.0
3,492,735 - BWI76_RS16840 0.20 +1.1
3,492,765 + BWI76_RS16840 0.24 +0.1
3,493,165 - BWI76_RS16840 0.75 +1.3
3,493,403 + +1.8
3,493,432 - -0.9
3,493,441 + -0.1
3,493,480 + BWI76_RS16845 0.12 -0.1
3,493,493 - BWI76_RS16845 0.14 +0.7
3,493,651 - BWI76_RS16845 0.30 +0.4
3,493,715 - BWI76_RS16845 0.36 -0.3
3,493,903 - BWI76_RS16845 0.55 -0.6
3,493,919 + BWI76_RS16845 0.57 +0.1
3,494,251 + BWI76_RS16845 0.90 +0.2

Or see this region's nucleotide sequence