Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16035

Experiment: Glucuronamide (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16025 and BWI76_RS16030 are separated by 17 nucleotidesBWI76_RS16030 and BWI76_RS16035 overlap by 8 nucleotidesBWI76_RS16035 and BWI76_RS16040 overlap by 1 nucleotidesBWI76_RS16040 and BWI76_RS16045 are separated by 129 nucleotides BWI76_RS16025: BWI76_RS16025 - triphosphoribosyl-dephospho-CoA synthase, at 3,323,772 to 3,324,614 _RS16025 BWI76_RS16030: BWI76_RS16030 - malonate decarboxylase acyl carrier protein, at 3,324,632 to 3,324,931 _RS16030 BWI76_RS16035: BWI76_RS16035 - biotin-independent malonate decarboxylase subunit beta, at 3,324,924 to 3,325,757 _RS16035 BWI76_RS16040: BWI76_RS16040 - biotin-independent malonate decarboxylase subunit gamma, at 3,325,757 to 3,326,557 _RS16040 BWI76_RS16045: BWI76_RS16045 - transporter, at 3,326,687 to 3,327,646 _RS16045 Position (kb) 3324 3325 3326Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3324.104 kb on - strand, within BWI76_RS16025at 3324.304 kb on - strand, within BWI76_RS16025at 3324.729 kb on - strand, within BWI76_RS16030at 3324.776 kb on - strand, within BWI76_RS16030at 3324.906 kb on + strandat 3324.991 kb on - strandat 3325.238 kb on + strand, within BWI76_RS16035at 3325.287 kb on - strand, within BWI76_RS16035at 3325.339 kb on + strand, within BWI76_RS16035at 3326.371 kb on + strand, within BWI76_RS16040at 3326.379 kb on - strand, within BWI76_RS16040at 3326.517 kb on + strandat 3326.525 kb on - strandat 3326.580 kb on - strandat 3326.582 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
remove
3,324,104 - BWI76_RS16025 0.39 +1.2
3,324,304 - BWI76_RS16025 0.63 +0.7
3,324,729 - BWI76_RS16030 0.32 -1.3
3,324,776 - BWI76_RS16030 0.48 +0.4
3,324,906 + -0.0
3,324,991 - +0.9
3,325,238 + BWI76_RS16035 0.38 -4.2
3,325,287 - BWI76_RS16035 0.44 -0.8
3,325,339 + BWI76_RS16035 0.50 -3.3
3,326,371 + BWI76_RS16040 0.77 +0.3
3,326,379 - BWI76_RS16040 0.78 -1.1
3,326,517 + +0.4
3,326,525 - -0.1
3,326,580 - -1.2
3,326,582 + -0.9

Or see this region's nucleotide sequence