Experiment: Glucuronamide (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14470 and BWI76_RS14475 are separated by 62 nucleotides BWI76_RS14475 and BWI76_RS14480 are separated by 350 nucleotides
BWI76_RS14470: BWI76_RS14470 - L-serine ammonia-lyase, at 3,019,110 to 3,020,477
_RS14470
BWI76_RS14475: BWI76_RS14475 - serine/threonine transporter, at 3,020,540 to 3,021,823
_RS14475
BWI76_RS14480: BWI76_RS14480 - hypothetical protein, at 3,022,174 to 3,023,424
_RS14480
Position (kb)
3020
3021
3022 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3019.684 kb on + strand at 3019.759 kb on - strand, within BWI76_RS14470 at 3019.924 kb on + strand, within BWI76_RS14470 at 3019.947 kb on - strand, within BWI76_RS14470 at 3019.950 kb on + strand, within BWI76_RS14470 at 3020.024 kb on + strand, within BWI76_RS14470 at 3020.206 kb on - strand, within BWI76_RS14470 at 3020.270 kb on + strand, within BWI76_RS14470 at 3020.323 kb on + strand, within BWI76_RS14470 at 3020.334 kb on - strand at 3020.361 kb on - strand at 3020.414 kb on + strand at 3020.621 kb on + strand at 3020.834 kb on - strand, within BWI76_RS14475 at 3020.904 kb on + strand, within BWI76_RS14475 at 3020.946 kb on - strand, within BWI76_RS14475 at 3020.975 kb on + strand, within BWI76_RS14475 at 3021.074 kb on + strand, within BWI76_RS14475 at 3021.074 kb on + strand, within BWI76_RS14475 at 3021.082 kb on - strand, within BWI76_RS14475 at 3021.249 kb on - strand, within BWI76_RS14475 at 3021.257 kb on - strand, within BWI76_RS14475 at 3021.257 kb on - strand, within BWI76_RS14475 at 3021.259 kb on - strand at 3021.259 kb on - strand, within BWI76_RS14475 at 3021.333 kb on + strand, within BWI76_RS14475 at 3021.333 kb on + strand, within BWI76_RS14475 at 3021.341 kb on - strand, within BWI76_RS14475 at 3021.341 kb on - strand, within BWI76_RS14475 at 3021.341 kb on - strand, within BWI76_RS14475 at 3021.380 kb on - strand, within BWI76_RS14475 at 3021.530 kb on + strand, within BWI76_RS14475 at 3021.538 kb on - strand, within BWI76_RS14475 at 3021.538 kb on - strand, within BWI76_RS14475 at 3021.581 kb on - strand, within BWI76_RS14475 at 3021.636 kb on - strand, within BWI76_RS14475 at 3021.721 kb on - strand at 3021.726 kb on - strand at 3021.735 kb on + strand at 3021.770 kb on - strand at 3021.857 kb on - strand at 3021.930 kb on - strand at 3022.183 kb on + strand at 3022.189 kb on - strand at 3022.201 kb on - strand at 3022.201 kb on - strand at 3022.329 kb on - strand, within BWI76_RS14480 at 3022.421 kb on - strand, within BWI76_RS14480 at 3022.484 kb on + strand, within BWI76_RS14480 at 3022.592 kb on + strand, within BWI76_RS14480 at 3022.698 kb on + strand, within BWI76_RS14480
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (N) remove 3,019,684 + -1.3 3,019,759 - BWI76_RS14470 0.47 -0.4 3,019,924 + BWI76_RS14470 0.60 -1.9 3,019,947 - BWI76_RS14470 0.61 -2.0 3,019,950 + BWI76_RS14470 0.61 -0.3 3,020,024 + BWI76_RS14470 0.67 -1.7 3,020,206 - BWI76_RS14470 0.80 +0.0 3,020,270 + BWI76_RS14470 0.85 -3.4 3,020,323 + BWI76_RS14470 0.89 +1.2 3,020,334 - +1.1 3,020,361 - +1.3 3,020,414 + +1.1 3,020,621 + -0.5 3,020,834 - BWI76_RS14475 0.23 -0.0 3,020,904 + BWI76_RS14475 0.28 -2.1 3,020,946 - BWI76_RS14475 0.32 +0.0 3,020,975 + BWI76_RS14475 0.34 +0.6 3,021,074 + BWI76_RS14475 0.42 -0.7 3,021,074 + BWI76_RS14475 0.42 -1.6 3,021,082 - BWI76_RS14475 0.42 +0.7 3,021,249 - BWI76_RS14475 0.55 -1.0 3,021,257 - BWI76_RS14475 0.56 -1.8 3,021,257 - BWI76_RS14475 0.56 +0.6 3,021,259 - +1.4 3,021,259 - BWI76_RS14475 0.56 +0.2 3,021,333 + BWI76_RS14475 0.62 -0.2 3,021,333 + BWI76_RS14475 0.62 +1.3 3,021,341 - BWI76_RS14475 0.62 -0.8 3,021,341 - BWI76_RS14475 0.62 -2.6 3,021,341 - BWI76_RS14475 0.62 -1.1 3,021,380 - BWI76_RS14475 0.65 +0.6 3,021,530 + BWI76_RS14475 0.77 -2.1 3,021,538 - BWI76_RS14475 0.78 +0.7 3,021,538 - BWI76_RS14475 0.78 +3.1 3,021,581 - BWI76_RS14475 0.81 -1.0 3,021,636 - BWI76_RS14475 0.85 -1.6 3,021,721 - +0.1 3,021,726 - +2.1 3,021,735 + -2.2 3,021,770 - -1.4 3,021,857 - +1.7 3,021,930 - +0.2 3,022,183 + -0.2 3,022,189 - +0.0 3,022,201 - +0.0 3,022,201 - +0.6 3,022,329 - BWI76_RS14480 0.12 -1.6 3,022,421 - BWI76_RS14480 0.20 -1.6 3,022,484 + BWI76_RS14480 0.25 -0.0 3,022,592 + BWI76_RS14480 0.33 +0.1 3,022,698 + BWI76_RS14480 0.42 +0.9
Or see this region's nucleotide sequence