Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09375

Experiment: Glucuronamide (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09365 and BWI76_RS09370 are separated by 9 nucleotidesBWI76_RS09370 and BWI76_RS09375 are separated by 52 nucleotidesBWI76_RS09375 and BWI76_RS09380 are separated by 14 nucleotidesBWI76_RS09380 and BWI76_RS09385 overlap by 8 nucleotides BWI76_RS09365: BWI76_RS09365 - phage tail sheath protein, at 1,965,488 to 1,966,660 _RS09365 BWI76_RS09370: BWI76_RS09370 - major tail tube protein, at 1,966,670 to 1,967,185 _RS09370 BWI76_RS09375: BWI76_RS09375 - phage tail protein, at 1,967,238 to 1,967,537 _RS09375 BWI76_RS09380: BWI76_RS09380 - GpE family phage tail protein, at 1,967,552 to 1,967,671 _RS09380 BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291 _RS09385 Position (kb) 1967 1968Strain fitness (log2 ratio) -2 -1 0 1at 1966.350 kb on - strand, within BWI76_RS09365at 1966.449 kb on + strand, within BWI76_RS09365at 1966.667 kb on + strandat 1966.667 kb on + strandat 1967.185 kb on + strandat 1967.347 kb on + strand, within BWI76_RS09375at 1967.482 kb on + strand, within BWI76_RS09375at 1967.746 kb on + strandat 1968.142 kb on - strand, within BWI76_RS09385at 1968.321 kb on + strand, within BWI76_RS09385

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (N)
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1,966,350 - BWI76_RS09365 0.73 -0.6
1,966,449 + BWI76_RS09365 0.82 +0.1
1,966,667 + +1.0
1,966,667 + +0.4
1,967,185 + +0.3
1,967,347 + BWI76_RS09375 0.36 +0.3
1,967,482 + BWI76_RS09375 0.81 +0.8
1,967,746 + -0.5
1,968,142 - BWI76_RS09385 0.18 -2.3
1,968,321 + BWI76_RS09385 0.25 +0.3

Or see this region's nucleotide sequence