Experiment: 1 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0917 and DvMF_R0023 are separated by 406 nucleotides DvMF_R0023 and DvMF_R0024 are separated by 105 nucleotides DvMF_R0024 and DvMF_R0025 are separated by 168 nucleotides DvMF_R0025 and DvMF_R0026 are separated by 33 nucleotides DvMF_R0026 and DvMF_R0027 are separated by 112 nucleotides
DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161
_0917
DvMF_R0023: DvMF_R0023 - 5S ribosomal RNA (RefSeq), at 1,104,568 to 1,104,682
_R0023
DvMF_R0024: DvMF_R0024 - 23S ribosomal RNA (RefSeq), at 1,104,788 to 1,107,713
_R0024
DvMF_R0025: DvMF_R0025 - tRNA-Ala (RefSeq), at 1,107,882 to 1,107,957
_R0025
DvMF_R0026: DvMF_R0026 - tRNA-Ile (RefSeq), at 1,107,991 to 1,108,067
_R0026
DvMF_R0027: DvMF_R0027 - 16S ribosomal RNA (RefSeq), at 1,108,180 to 1,109,715
_R0027
Position (kb)
1104
1105
1106
1107
1108 Strain fitness (log2 ratio)
-1
0
1 at 1103.879 kb on - strand, within DvMF_0917 at 1103.977 kb on - strand, within DvMF_0917 at 1103.979 kb on - strand, within DvMF_0917 at 1104.328 kb on + strand at 1104.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1 day starvation, 30C remove 1,103,879 - DvMF_0917 0.84 +0.3 1,103,977 - DvMF_0917 0.90 +0.3 1,103,979 - DvMF_0917 0.90 +1.1 1,104,328 + +0.3 1,104,389 - -0.3
Or see this region's nucleotide sequence