Experiment: 1 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0130 and DvMF_0131 are separated by 360 nucleotides DvMF_0131 and DvMF_0132 are separated by 2 nucleotides DvMF_0132 and DvMF_0133 are separated by 127 nucleotides
DvMF_0130: DvMF_0130 - DNA polymerase III, alpha subunit (RefSeq), at 143,616 to 147,137
_0130
DvMF_0131: DvMF_0131 - hypothetical protein (RefSeq), at 147,498 to 147,839
_0131
DvMF_0132: DvMF_0132 - metal-dependent phosphohydrolase HD region (RefSeq), at 147,842 to 148,711
_0132
DvMF_0133: DvMF_0133 - Methyltransferase type 11 (RefSeq), at 148,839 to 149,576
_0133
Position (kb) 147
148
149 Strain fitness (log2 ratio) -1
0
1
2
3 at 147.377 kb on + strand at 147.447 kb on + strand at 147.675 kb on + strand, within DvMF_0131 at 147.795 kb on - strand, within DvMF_0131 at 147.882 kb on - strand at 148.010 kb on + strand, within DvMF_0132 at 148.019 kb on + strand, within DvMF_0132 at 148.048 kb on - strand, within DvMF_0132 at 148.073 kb on - strand, within DvMF_0132 at 148.275 kb on + strand, within DvMF_0132 at 148.364 kb on + strand, within DvMF_0132 at 148.372 kb on - strand, within DvMF_0132 at 148.818 kb on + strand at 148.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1 day starvation, 30C remove 147,377 + +0.5 147,447 + -0.2 147,675 + DvMF_0131 0.52 +0.7 147,795 - DvMF_0131 0.87 +2.8 147,882 - +0.0 148,010 + DvMF_0132 0.19 -0.2 148,019 + DvMF_0132 0.20 +1.2 148,048 - DvMF_0132 0.24 +0.3 148,073 - DvMF_0132 0.27 -1.0 148,275 + DvMF_0132 0.50 +0.5 148,364 + DvMF_0132 0.60 +0.4 148,372 - DvMF_0132 0.61 -1.6 148,818 + -0.3 148,894 - +0.6
Or see this region's nucleotide sequence