Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3339

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Doxycycline hyclate 0.004 mg/ml
3,504,735	+				+0.3
3,504,761	+				+0.2
3,504,769	-				+0.2
3,504,769	-				+0.7
3,504,769	-				+0.2
3,504,774	-				-0.0
3,504,797	+				+0.5
3,504,804	-				+0.5
3,504,823	+				-1.2
3,504,831	-				-0.2
3,504,888	-				-1.0
3,504,888	-				+0.1
3,504,977	+		Dshi_3338	0.20	-3.1
3,504,993	+		Dshi_3338	0.22	+0.4
3,505,026	+		Dshi_3338	0.25	-1.4
3,505,026	+		Dshi_3338	0.25	+0.3
3,505,117	+		Dshi_3338	0.36	-0.0
3,505,125	-		Dshi_3338	0.36	-0.5
3,505,137	+		Dshi_3338	0.38	-0.7
3,505,144	-		Dshi_3338	0.39	-0.5
3,505,145	+		Dshi_3338	0.39	+0.9
3,505,270	+		Dshi_3338	0.53	+0.6
3,505,278	-		Dshi_3338	0.54	-1.0
3,505,331	+		Dshi_3338	0.60	+0.0
3,505,375	+		Dshi_3338	0.65	+0.7
3,505,375	+		Dshi_3338	0.65	-0.9
3,505,385	+		Dshi_3338	0.66	-0.1
3,505,424	+		Dshi_3338	0.70	+0.0
3,505,424	+		Dshi_3338	0.70	-0.8
3,505,424	+		Dshi_3338	0.70	-0.2
3,505,431	-		Dshi_3338	0.71	-1.3
3,505,456	+		Dshi_3338	0.74	-0.1
3,505,461	+		Dshi_3338	0.74	+0.9
3,505,507	-		Dshi_3338	0.79	+0.8
3,505,516	+		Dshi_3338	0.80	+0.3
3,505,524	-		Dshi_3338	0.81	-1.3
3,505,563	+		Dshi_3338	0.86	-0.1
3,505,628	-				-0.8
3,505,713	+				-0.1
3,505,890	+		Dshi_3339	0.26	-0.8
3,505,980	-		Dshi_3339	0.36	-0.1
3,506,009	+		Dshi_3339	0.39	-0.0
3,506,017	-		Dshi_3339	0.40	-0.1
3,506,027	+		Dshi_3339	0.41	-0.2
3,506,037	+		Dshi_3339	0.42	+0.3
3,506,051	-		Dshi_3339	0.44	-0.3
3,506,095	-		Dshi_3339	0.49	-0.5
3,506,122	+		Dshi_3339	0.52	-1.6
3,506,128	+		Dshi_3339	0.53	+0.8
3,506,130	-		Dshi_3339	0.53	-0.9
3,506,143	+		Dshi_3339	0.54	-0.1
3,506,156	-		Dshi_3339	0.56	+1.0
3,506,156	-		Dshi_3339	0.56	+0.8
3,506,189	+		Dshi_3339	0.60	+0.3
3,506,226	-		Dshi_3339	0.64	-0.3
3,506,302	-		Dshi_3339	0.72	+0.3
3,506,328	+		Dshi_3339	0.75	+0.1
3,506,336	-		Dshi_3339	0.76	-2.0
3,506,336	-		Dshi_3339	0.76	-2.7
3,506,443	-		Dshi_3339	0.88	-0.2
3,506,464	-				-2.4
3,506,579	-				-0.7
3,506,639	-				-0.1
3,506,641	+				-0.4
3,506,734	-		Dshi_3340	0.16	+0.1
3,506,734	-		Dshi_3340	0.16	+1.7
3,506,744	-		Dshi_3340	0.18	+0.7
3,506,791	-		Dshi_3340	0.25	-0.7
3,507,001	+		Dshi_3340	0.59	+0.3
3,507,131	+		Dshi_3340	0.80	-0.2
3,507,233	-				-0.4
3,507,374	-				-0.3
3,507,385	-				-0.9