Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1332

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1330 and Dshi_1331 are separated by 20 nucleotidesDshi_1331 and Dshi_1332 overlap by 1 nucleotidesDshi_1332 and Dshi_1333 are separated by 88 nucleotides Dshi_1330: Dshi_1330 - biotin--acetyl-CoA-carboxylase ligase (RefSeq), at 1,381,070 to 1,381,825 _1330 Dshi_1331: Dshi_1331 - putative transcriptional acitvator, Baf family (RefSeq), at 1,381,846 to 1,382,616 _1331 Dshi_1332: Dshi_1332 - beta-lactamase domain protein (RefSeq), at 1,382,616 to 1,384,286 _1332 Dshi_1333: Dshi_1333 - DEAD/DEAH box helicase domain protein (RefSeq), at 1,384,375 to 1,385,856 _1333 Position (kb) 1382 1383 1384 1385Strain fitness (log2 ratio) -2 -1 0 1at 1382.643 kb on - strandat 1382.997 kb on - strand, within Dshi_1332at 1383.131 kb on + strand, within Dshi_1332at 1383.171 kb on + strand, within Dshi_1332at 1383.192 kb on + strand, within Dshi_1332at 1383.672 kb on + strand, within Dshi_1332at 1383.672 kb on + strand, within Dshi_1332at 1383.832 kb on - strand, within Dshi_1332at 1383.873 kb on + strand, within Dshi_1332at 1383.929 kb on - strand, within Dshi_1332at 1383.983 kb on + strand, within Dshi_1332at 1384.148 kb on - strandat 1385.145 kb on + strand, within Dshi_1333

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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1,382,643 - -0.8
1,382,997 - Dshi_1332 0.23 +0.0
1,383,131 + Dshi_1332 0.31 -0.7
1,383,171 + Dshi_1332 0.33 -1.1
1,383,192 + Dshi_1332 0.34 +0.2
1,383,672 + Dshi_1332 0.63 -0.5
1,383,672 + Dshi_1332 0.63 +0.2
1,383,832 - Dshi_1332 0.73 +0.6
1,383,873 + Dshi_1332 0.75 -0.1
1,383,929 - Dshi_1332 0.79 -1.0
1,383,983 + Dshi_1332 0.82 -0.9
1,384,148 - +0.2
1,385,145 + Dshi_1333 0.52 -2.1

Or see this region's nucleotide sequence