Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1035 and Dshi_1036 are separated by 52 nucleotides Dshi_1036 and Dshi_1037 are separated by 30 nucleotides Dshi_1037 and Dshi_1038 overlap by 4 nucleotides Dshi_1038 and Dshi_1039 overlap by 4 nucleotides
Dshi_1035: Dshi_1035 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,067,835 to 1,068,809
_1035
Dshi_1036: Dshi_1036 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 1,068,862 to 1,069,407
_1036
Dshi_1037: Dshi_1037 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,069,438 to 1,070,742
_1037
Dshi_1038: Dshi_1038 - Asp/Glu racemase (RefSeq), at 1,070,739 to 1,071,509
_1038
Dshi_1039: Dshi_1039 - monooxygenase FAD-binding (RefSeq), at 1,071,506 to 1,072,714
_1039
Position (kb)
1069
1070
1071 Strain fitness (log2 ratio)
-1
0
1 at 1068.484 kb on - strand, within Dshi_1035 at 1068.511 kb on - strand, within Dshi_1035 at 1068.682 kb on + strand, within Dshi_1035 at 1068.789 kb on - strand at 1068.874 kb on + strand at 1068.925 kb on + strand, within Dshi_1036 at 1068.997 kb on - strand, within Dshi_1036 at 1069.044 kb on - strand, within Dshi_1036 at 1069.114 kb on - strand, within Dshi_1036 at 1069.170 kb on - strand, within Dshi_1036 at 1069.220 kb on + strand, within Dshi_1036 at 1069.370 kb on - strand at 1069.370 kb on - strand at 1069.441 kb on + strand at 1069.465 kb on - strand at 1069.546 kb on + strand at 1069.630 kb on - strand, within Dshi_1037 at 1069.706 kb on + strand, within Dshi_1037 at 1069.820 kb on + strand, within Dshi_1037 at 1070.424 kb on + strand, within Dshi_1037 at 1070.505 kb on - strand, within Dshi_1037 at 1070.537 kb on + strand, within Dshi_1037 at 1070.866 kb on + strand, within Dshi_1038 at 1070.945 kb on - strand, within Dshi_1038 at 1071.005 kb on + strand, within Dshi_1038 at 1071.016 kb on + strand, within Dshi_1038 at 1071.020 kb on + strand, within Dshi_1038 at 1071.134 kb on + strand, within Dshi_1038 at 1071.191 kb on + strand, within Dshi_1038 at 1071.411 kb on - strand, within Dshi_1038 at 1071.432 kb on + strand, within Dshi_1038 at 1071.538 kb on + strand at 1071.652 kb on - strand, within Dshi_1039 at 1071.683 kb on + strand, within Dshi_1039
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 1,068,484 - Dshi_1035 0.67 +0.6 1,068,511 - Dshi_1035 0.69 -0.6 1,068,682 + Dshi_1035 0.87 -0.0 1,068,789 - +0.1 1,068,874 + +0.4 1,068,925 + Dshi_1036 0.12 +0.1 1,068,997 - Dshi_1036 0.25 +0.1 1,069,044 - Dshi_1036 0.33 +0.7 1,069,114 - Dshi_1036 0.46 +0.6 1,069,170 - Dshi_1036 0.56 -0.6 1,069,220 + Dshi_1036 0.66 -1.5 1,069,370 - -1.4 1,069,370 - +0.7 1,069,441 + +1.0 1,069,465 - +0.2 1,069,546 + +0.7 1,069,630 - Dshi_1037 0.15 -0.0 1,069,706 + Dshi_1037 0.21 -1.4 1,069,820 + Dshi_1037 0.29 -0.7 1,070,424 + Dshi_1037 0.76 -1.6 1,070,505 - Dshi_1037 0.82 +0.2 1,070,537 + Dshi_1037 0.84 -0.7 1,070,866 + Dshi_1038 0.16 -0.8 1,070,945 - Dshi_1038 0.27 +0.5 1,071,005 + Dshi_1038 0.35 -0.7 1,071,016 + Dshi_1038 0.36 -0.3 1,071,020 + Dshi_1038 0.36 +0.6 1,071,134 + Dshi_1038 0.51 +0.4 1,071,191 + Dshi_1038 0.59 +0.8 1,071,411 - Dshi_1038 0.87 -0.5 1,071,432 + Dshi_1038 0.90 +0.6 1,071,538 + -1.2 1,071,652 - Dshi_1039 0.12 -0.4 1,071,683 + Dshi_1039 0.15 -0.4
Or see this region's nucleotide sequence