Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0975 and Dshi_0976 are separated by 217 nucleotides Dshi_0976 and Dshi_R0022 are separated by 197 nucleotides Dshi_R0022 and Dshi_0977 are separated by 294 nucleotides
Dshi_0975: Dshi_0975 - transcriptional regulator, LacI family (RefSeq), at 996,698 to 997,732
_0975
Dshi_0976: Dshi_0976 - resolvase-like protein (RefSeq), at 997,950 to 998,168
_0976
Dshi_R0022: Dshi_R0022 - tRNA-Thr (RefSeq), at 998,366 to 998,440
_R0022
Dshi_0977: Dshi_0977 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 998,735 to 1,000,003
_0977
Position (kb)
997
998
999 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 997.080 kb on + strand, within Dshi_0975 at 997.114 kb on + strand, within Dshi_0975 at 997.231 kb on - strand, within Dshi_0975 at 997.431 kb on - strand, within Dshi_0975 at 997.521 kb on - strand, within Dshi_0975 at 997.597 kb on - strand, within Dshi_0975 at 997.805 kb on + strand at 997.846 kb on + strand at 997.847 kb on + strand at 997.855 kb on - strand at 997.857 kb on + strand at 997.865 kb on - strand at 997.865 kb on - strand at 997.875 kb on - strand at 997.960 kb on + strand at 997.995 kb on - strand, within Dshi_0976 at 998.019 kb on + strand, within Dshi_0976 at 998.089 kb on + strand, within Dshi_0976 at 998.231 kb on + strand at 998.231 kb on + strand at 998.256 kb on - strand at 998.282 kb on - strand at 998.305 kb on - strand at 998.534 kb on - strand at 998.535 kb on - strand at 998.535 kb on - strand at 998.535 kb on - strand at 998.546 kb on - strand at 998.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 997,080 + Dshi_0975 0.37 -2.7 997,114 + Dshi_0975 0.40 -2.0 997,231 - Dshi_0975 0.51 -3.8 997,431 - Dshi_0975 0.71 -0.0 997,521 - Dshi_0975 0.80 -1.7 997,597 - Dshi_0975 0.87 -0.9 997,805 + +0.5 997,846 + -0.5 997,847 + +0.3 997,855 - -0.0 997,857 + +0.1 997,865 - -0.2 997,865 - -0.5 997,875 - -0.9 997,960 + -0.5 997,995 - Dshi_0976 0.21 -0.4 998,019 + Dshi_0976 0.32 -0.2 998,089 + Dshi_0976 0.63 +0.1 998,231 + +0.6 998,231 + -0.2 998,256 - -0.7 998,282 - +0.8 998,305 - -0.5 998,534 - -0.5 998,535 - +0.2 998,535 - -0.3 998,535 - +0.1 998,546 - +0.4 998,590 - -0.8
Or see this region's nucleotide sequence