Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0958

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0956 and Dshi_0957 overlap by 1 nucleotidesDshi_0957 and Dshi_0958 are separated by 22 nucleotidesDshi_0958 and Dshi_0959 are separated by 217 nucleotides Dshi_0956: Dshi_0956 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 980,662 to 981,948 _0956 Dshi_0957: Dshi_0957 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 981,948 to 982,469 _0957 Dshi_0958: Dshi_0958 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 982,492 to 983,472 _0958 Dshi_0959: Dshi_0959 - transcriptional regulator, RpiR family (RefSeq), at 983,690 to 984,535 _0959 Position (kb) 982 983 984Strain fitness (log2 ratio) -1 0 1at 981.571 kb on + strand, within Dshi_0956at 981.915 kb on + strandat 981.923 kb on - strandat 981.929 kb on - strandat 982.018 kb on + strand, within Dshi_0957at 982.037 kb on + strand, within Dshi_0957at 982.082 kb on + strand, within Dshi_0957at 982.090 kb on - strand, within Dshi_0957at 982.090 kb on - strand, within Dshi_0957at 982.334 kb on + strand, within Dshi_0957at 982.519 kb on - strandat 982.638 kb on - strand, within Dshi_0958at 982.679 kb on - strand, within Dshi_0958at 982.725 kb on + strand, within Dshi_0958at 982.725 kb on + strand, within Dshi_0958at 982.725 kb on + strand, within Dshi_0958at 982.725 kb on + strand, within Dshi_0958at 982.733 kb on - strand, within Dshi_0958at 982.802 kb on + strand, within Dshi_0958at 982.802 kb on + strand, within Dshi_0958at 982.807 kb on + strand, within Dshi_0958at 982.817 kb on + strand, within Dshi_0958at 982.830 kb on - strand, within Dshi_0958at 982.897 kb on - strand, within Dshi_0958at 983.047 kb on + strand, within Dshi_0958at 983.079 kb on - strand, within Dshi_0958at 983.116 kb on + strand, within Dshi_0958at 983.138 kb on - strand, within Dshi_0958at 983.261 kb on + strand, within Dshi_0958at 983.331 kb on + strand, within Dshi_0958at 983.339 kb on - strand, within Dshi_0958at 983.422 kb on + strandat 983.457 kb on + strandat 983.465 kb on - strandat 983.465 kb on - strandat 983.664 kb on + strandat 983.697 kb on - strandat 983.697 kb on - strandat 983.697 kb on - strandat 983.813 kb on - strand, within Dshi_0959at 983.831 kb on + strand, within Dshi_0959at 983.831 kb on + strand, within Dshi_0959at 984.038 kb on + strand, within Dshi_0959at 984.064 kb on + strand, within Dshi_0959at 984.098 kb on + strand, within Dshi_0959at 984.189 kb on + strand, within Dshi_0959at 984.243 kb on + strand, within Dshi_0959at 984.256 kb on - strand, within Dshi_0959at 984.288 kb on - strand, within Dshi_0959

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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981,571 + Dshi_0956 0.71 -0.3
981,915 + +0.8
981,923 - +0.7
981,929 - -0.4
982,018 + Dshi_0957 0.13 +0.4
982,037 + Dshi_0957 0.17 -0.4
982,082 + Dshi_0957 0.26 -0.7
982,090 - Dshi_0957 0.27 -1.0
982,090 - Dshi_0957 0.27 +0.5
982,334 + Dshi_0957 0.74 -0.0
982,519 - -0.0
982,638 - Dshi_0958 0.15 -0.1
982,679 - Dshi_0958 0.19 -0.0
982,725 + Dshi_0958 0.24 +0.5
982,725 + Dshi_0958 0.24 +1.1
982,725 + Dshi_0958 0.24 +0.1
982,725 + Dshi_0958 0.24 +0.5
982,733 - Dshi_0958 0.25 +0.3
982,802 + Dshi_0958 0.32 +0.5
982,802 + Dshi_0958 0.32 +0.4
982,807 + Dshi_0958 0.32 +0.4
982,817 + Dshi_0958 0.33 +0.6
982,830 - Dshi_0958 0.34 +0.6
982,897 - Dshi_0958 0.41 +0.4
983,047 + Dshi_0958 0.57 -0.1
983,079 - Dshi_0958 0.60 +1.2
983,116 + Dshi_0958 0.64 -1.4
983,138 - Dshi_0958 0.66 -0.0
983,261 + Dshi_0958 0.78 -0.4
983,331 + Dshi_0958 0.86 +0.6
983,339 - Dshi_0958 0.86 -0.9
983,422 + -0.6
983,457 + -0.0
983,465 - +0.6
983,465 - -1.4
983,664 + -0.2
983,697 - +0.0
983,697 - -0.5
983,697 - +0.6
983,813 - Dshi_0959 0.15 -1.0
983,831 + Dshi_0959 0.17 -1.1
983,831 + Dshi_0959 0.17 -1.0
984,038 + Dshi_0959 0.41 -0.7
984,064 + Dshi_0959 0.44 +0.0
984,098 + Dshi_0959 0.48 +0.1
984,189 + Dshi_0959 0.59 -0.2
984,243 + Dshi_0959 0.65 -0.1
984,256 - Dshi_0959 0.67 +0.7
984,288 - Dshi_0959 0.71 -1.0

Or see this region's nucleotide sequence