Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0956 and Dshi_0957 overlap by 1 nucleotides Dshi_0957 and Dshi_0958 are separated by 22 nucleotides Dshi_0958 and Dshi_0959 are separated by 217 nucleotides
Dshi_0956: Dshi_0956 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 980,662 to 981,948
_0956
Dshi_0957: Dshi_0957 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 981,948 to 982,469
_0957
Dshi_0958: Dshi_0958 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 982,492 to 983,472
_0958
Dshi_0959: Dshi_0959 - transcriptional regulator, RpiR family (RefSeq), at 983,690 to 984,535
_0959
Position (kb)
982
983
984 Strain fitness (log2 ratio)
-1
0
1 at 981.571 kb on + strand, within Dshi_0956 at 981.915 kb on + strand at 981.923 kb on - strand at 981.929 kb on - strand at 982.018 kb on + strand, within Dshi_0957 at 982.037 kb on + strand, within Dshi_0957 at 982.082 kb on + strand, within Dshi_0957 at 982.090 kb on - strand, within Dshi_0957 at 982.090 kb on - strand, within Dshi_0957 at 982.334 kb on + strand, within Dshi_0957 at 982.519 kb on - strand at 982.638 kb on - strand, within Dshi_0958 at 982.679 kb on - strand, within Dshi_0958 at 982.725 kb on + strand, within Dshi_0958 at 982.725 kb on + strand, within Dshi_0958 at 982.725 kb on + strand, within Dshi_0958 at 982.725 kb on + strand, within Dshi_0958 at 982.733 kb on - strand, within Dshi_0958 at 982.802 kb on + strand, within Dshi_0958 at 982.802 kb on + strand, within Dshi_0958 at 982.807 kb on + strand, within Dshi_0958 at 982.817 kb on + strand, within Dshi_0958 at 982.830 kb on - strand, within Dshi_0958 at 982.897 kb on - strand, within Dshi_0958 at 983.047 kb on + strand, within Dshi_0958 at 983.079 kb on - strand, within Dshi_0958 at 983.116 kb on + strand, within Dshi_0958 at 983.138 kb on - strand, within Dshi_0958 at 983.261 kb on + strand, within Dshi_0958 at 983.331 kb on + strand, within Dshi_0958 at 983.339 kb on - strand, within Dshi_0958 at 983.422 kb on + strand at 983.457 kb on + strand at 983.465 kb on - strand at 983.465 kb on - strand at 983.664 kb on + strand at 983.697 kb on - strand at 983.697 kb on - strand at 983.697 kb on - strand at 983.813 kb on - strand, within Dshi_0959 at 983.831 kb on + strand, within Dshi_0959 at 983.831 kb on + strand, within Dshi_0959 at 984.038 kb on + strand, within Dshi_0959 at 984.064 kb on + strand, within Dshi_0959 at 984.098 kb on + strand, within Dshi_0959 at 984.189 kb on + strand, within Dshi_0959 at 984.243 kb on + strand, within Dshi_0959 at 984.256 kb on - strand, within Dshi_0959 at 984.288 kb on - strand, within Dshi_0959
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 981,571 + Dshi_0956 0.71 -0.3 981,915 + +0.8 981,923 - +0.7 981,929 - -0.4 982,018 + Dshi_0957 0.13 +0.4 982,037 + Dshi_0957 0.17 -0.4 982,082 + Dshi_0957 0.26 -0.7 982,090 - Dshi_0957 0.27 -1.0 982,090 - Dshi_0957 0.27 +0.5 982,334 + Dshi_0957 0.74 -0.0 982,519 - -0.0 982,638 - Dshi_0958 0.15 -0.1 982,679 - Dshi_0958 0.19 -0.0 982,725 + Dshi_0958 0.24 +0.5 982,725 + Dshi_0958 0.24 +1.1 982,725 + Dshi_0958 0.24 +0.1 982,725 + Dshi_0958 0.24 +0.5 982,733 - Dshi_0958 0.25 +0.3 982,802 + Dshi_0958 0.32 +0.5 982,802 + Dshi_0958 0.32 +0.4 982,807 + Dshi_0958 0.32 +0.4 982,817 + Dshi_0958 0.33 +0.6 982,830 - Dshi_0958 0.34 +0.6 982,897 - Dshi_0958 0.41 +0.4 983,047 + Dshi_0958 0.57 -0.1 983,079 - Dshi_0958 0.60 +1.2 983,116 + Dshi_0958 0.64 -1.4 983,138 - Dshi_0958 0.66 -0.0 983,261 + Dshi_0958 0.78 -0.4 983,331 + Dshi_0958 0.86 +0.6 983,339 - Dshi_0958 0.86 -0.9 983,422 + -0.6 983,457 + -0.0 983,465 - +0.6 983,465 - -1.4 983,664 + -0.2 983,697 - +0.0 983,697 - -0.5 983,697 - +0.6 983,813 - Dshi_0959 0.15 -1.0 983,831 + Dshi_0959 0.17 -1.1 983,831 + Dshi_0959 0.17 -1.0 984,038 + Dshi_0959 0.41 -0.7 984,064 + Dshi_0959 0.44 +0.0 984,098 + Dshi_0959 0.48 +0.1 984,189 + Dshi_0959 0.59 -0.2 984,243 + Dshi_0959 0.65 -0.1 984,256 - Dshi_0959 0.67 +0.7 984,288 - Dshi_0959 0.71 -1.0
Or see this region's nucleotide sequence